Resolving dependencies... Configuring OneTuple-0.2.1... Configuring ViennaRNA-bindings-0.1.2.2... Building OneTuple-0.2.1... Building ViennaRNA-bindings-0.1.2.2... Installed OneTuple-0.2.1 Configuring base-compat-0.9.1... Building base-compat-0.9.1... Installed base-compat-0.9.1 Configuring base-orphans-0.5.4... Building base-orphans-0.5.4... Configuring bytestring-lexing-0.5.0.2... Installed ViennaRNA-bindings-0.1.2.2 Configuring cereal-0.5.4.0... Installed base-orphans-0.5.4 Building bytestring-lexing-0.5.0.2... Building cereal-0.5.4.0... Configuring dlist-0.8.0.2... Installed bytestring-lexing-0.5.0.2 Building dlist-0.8.0.2... Configuring cmdargs-0.10.14... Installed cereal-0.5.4.0 Building cmdargs-0.10.14... Configuring file-embed-0.0.10... Installed dlist-0.8.0.2 Building file-embed-0.0.10... Configuring fgl-5.5.3.0... Installed file-embed-0.0.10 Building fgl-5.5.3.0... Configuring parallel-3.2.1.0... Installed fgl-5.5.3.0 Building parallel-3.2.1.0... Configuring mtl-2.2.1... Installed parallel-3.2.1.0 Building mtl-2.2.1... Configuring prelude-extras-0.4.0.3... Installed cmdargs-0.10.14 Building prelude-extras-0.4.0.3... Configuring random-1.1... Installed mtl-2.2.1 Building random-1.1... Configuring reflection-2.1.2... Installed prelude-extras-0.4.0.3 Building reflection-2.1.2... Configuring primitive-0.6.1.0... Installed random-1.1 Building primitive-0.6.1.0... Configuring safe-0.3.10... Installed primitive-0.6.1.0 Configuring semigroups-0.18.2... Installed reflection-2.1.2 Building safe-0.3.10... Building semigroups-0.18.2... Configuring split-0.2.3.1... Installed semigroups-0.18.2 Configuring stm-2.4.4.1... Installed safe-0.3.10 Building split-0.2.3.1... Building stm-2.4.4.1... Configuring strict-0.3.2... Installed split-0.2.3.1 Building strict-0.3.2... Configuring syb-0.6... Installed stm-2.4.4.1 Building syb-0.6... Configuring th-lift-0.7.6... Installed strict-0.3.2 Building th-lift-0.7.6... Configuring time-locale-compat-0.1.1.3... Installed syb-0.6 Configuring transformers-compat-0.5.1.4... Installed th-lift-0.7.6 Building time-locale-compat-0.1.1.3... Building transformers-compat-0.5.1.4... Configuring text-1.2.2.1... Installed time-locale-compat-0.1.1.3 Building text-1.2.2.1... Configuring tuple-0.3.0.2... Installed transformers-compat-0.5.1.4 Building tuple-0.3.0.2... Installed text-1.2.2.1 Configuring fgl-extras-decompositions-0.1.1.0... Building fgl-extras-decompositions-0.1.1.0... Configuring logict-0.6.0.2... Installed fgl-extras-decompositions-0.1.1.0 Building logict-0.6.0.2... Configuring monad-primitive-0.1... Installed tuple-0.3.0.2 Building monad-primitive-0.1... Installed logict-0.6.0.2 Configuring tf-random-0.5... Configuring StateVar-1.1.0.4... Installed monad-primitive-0.1 Building tf-random-0.5... Building StateVar-1.1.0.4... Configuring vector-0.11.0.0... Installed StateVar-1.1.0.4 Building vector-0.11.0.0... Configuring exceptions-0.8.3... Installed tf-random-0.5 Building exceptions-0.8.3... Configuring mmorph-1.0.9... Installed exceptions-0.8.3 Building mmorph-1.0.9... Configuring th-expand-syns-0.4.1.0... Installed mmorph-1.0.9 Building th-expand-syns-0.4.1.0... Configuring tagged-0.8.5... Installed th-expand-syns-0.4.1.0 Building tagged-0.8.5... Configuring transformers-base-0.4.4... Installed tagged-0.8.5 Building transformers-base-0.4.4... Configuring hashable-1.2.4.0... Installed transformers-base-0.4.4 Building hashable-1.2.4.0... Configuring parsec-3.1.11... Installed hashable-1.2.4.0 Building parsec-3.1.11... Installed vector-0.11.0.0 Configuring smallcheck-1.1.1... Building smallcheck-1.1.1... Installed parsec-3.1.11 Configuring QuickCheck-2.8.2... Building QuickCheck-2.8.2... Configuring pipes-4.2.0... Installed smallcheck-1.1.1 Building pipes-4.2.0... Installed pipes-4.2.0 Configuring distributive-0.5.0.2... Building distributive-0.5.0.2... Configuring monad-control-1.0.1.0... Installed distributive-0.5.0.2 Building monad-control-1.0.1.0... Configuring th-reify-many-0.1.6... Installed monad-control-1.0.1.0 Configuring unordered-containers-0.2.7.1... Installed QuickCheck-2.8.2 Building th-reify-many-0.1.6... Building unordered-containers-0.2.7.1... Configuring void-0.7.1... Installed th-reify-many-0.1.6 Building void-0.7.1... Installed void-0.7.1 Configuring mwc-random-0.13.5.0... Building mwc-random-0.13.5.0... Configuring cereal-vector-0.2.0.1... Installed unordered-containers-0.2.7.1 Building cereal-vector-0.2.0.1... Configuring scientific-0.3.4.9... Installed mwc-random-0.13.5.0 Building scientific-0.3.4.9... Configuring vector-algorithms-0.7.0.1... Installed cereal-vector-0.2.0.1 Building vector-algorithms-0.7.0.1... Configuring th-lift-instances-0.1.11... Installed scientific-0.3.4.9 Building th-lift-instances-0.1.11... Configuring vector-binary-instances-0.2.3.3... Installed th-lift-instances-0.1.11 Building vector-binary-instances-0.2.3.3... Configuring vector-th-unbox-0.2.1.6... Installed vector-algorithms-0.7.0.1 Installed vector-binary-instances-0.2.3.3 Configuring ParsecTools-0.0.2.0... Building vector-th-unbox-0.2.1.6... Building ParsecTools-0.0.2.0... Configuring csv-0.1.2... Installed ParsecTools-0.0.2.0 Building csv-0.1.2... Installed vector-th-unbox-0.2.1.6 Configuring lifted-base-0.2.3.8... Building lifted-base-0.2.3.8... Configuring repa-3.4.1.2... Installed csv-0.1.2 Building repa-3.4.1.2... Configuring contravariant-1.4... Installed lifted-base-0.2.3.8 Building contravariant-1.4... Configuring mwc-random-monad-0.7.3.1... Installed contravariant-1.4 Building mwc-random-monad-0.7.3.1... Configuring bytes-0.15.2... Installed mwc-random-monad-0.7.3.1 Building bytes-0.15.2... Configuring attoparsec-0.13.1.0... Installed bytes-0.15.2 Building attoparsec-0.13.1.0... Configuring th-orphans-0.13.3... Installed repa-3.4.1.2 Building th-orphans-0.13.3... Installed attoparsec-0.13.1.0 Configuring resourcet-1.1.8.1... Building resourcet-1.1.8.1... Configuring comonad-5... Installed th-orphans-0.13.3 Installed resourcet-1.1.8.1 Configuring bits-0.5... Building comonad-5... Building bits-0.5... Installed bits-0.5 Configuring aeson-1.0.2.1... Configuring conduit-1.2.8... Installed comonad-5 Building aeson-1.0.2.1... Building conduit-1.2.8... Configuring OrderedBits-0.0.1.1... Installed conduit-1.2.8 Building OrderedBits-0.0.1.1... Installed OrderedBits-0.0.1.1 Configuring bifunctors-5.4.1... Building bifunctors-5.4.1... Installed bifunctors-5.4.1 Configuring profunctors-5.2... Building profunctors-5.2... Configuring semigroupoids-5.1... Installed aeson-1.0.2.1 Building semigroupoids-5.1... Installed profunctors-5.2 Installed semigroupoids-5.1 Configuring free-4.12.4... Building free-4.12.4... Installed free-4.12.4 Configuring adjunctions-4.3... Building adjunctions-4.3... Installed adjunctions-4.3 Configuring kan-extensions-5.0.1... Building kan-extensions-5.0.1... Installed kan-extensions-5.0.1 Configuring DPutils-0.0.0.2... Configuring lens-4.15.1... Building DPutils-0.0.0.2... Installed DPutils-0.0.0.2 Configuring PrimitiveArray-0.7.1.0... Building lens-4.15.1... Building PrimitiveArray-0.7.1.0... Installed PrimitiveArray-0.7.1.0 Configuring ADPfusion-0.5.2.0... Building ADPfusion-0.5.2.0... Configuring BiobaseXNA-0.8.3.0... Installed lens-4.15.1 Building BiobaseXNA-0.8.3.0... Failed to install BiobaseXNA-0.8.3.0 Build log ( /home/builder/.cabal/logs/BiobaseXNA-0.8.3.0.log ): cabal: Entering directory '/tmp/cabal-tmp-12042/BiobaseXNA-0.8.3.0' Configuring BiobaseXNA-0.8.3.0... Building BiobaseXNA-0.8.3.0... Preprocessing library BiobaseXNA-0.8.3.0... Biobase/Primary.hs:4:14: warning: -XOverlappingInstances is deprecated: instead use per-instance pragmas OVERLAPPING/OVERLAPPABLE/OVERLAPS Biobase/Secondary.hs:8:14: warning: -XOverlappingInstances is deprecated: instead use per-instance pragmas OVERLAPPING/OVERLAPPABLE/OVERLAPS [ 1 of 11] Compiling Biobase.Primary.IUPAC ( Biobase/Primary/IUPAC.hs, dist/build/Biobase/Primary/IUPAC.o ) [ 2 of 11] Compiling Biobase.Primary.Bounds ( Biobase/Primary/Bounds.hs, dist/build/Biobase/Primary/Bounds.o ) [ 3 of 11] Compiling Biobase.Primary ( Biobase/Primary.hs, dist/build/Biobase/Primary.o ) Biobase/Primary.hs:38:1: error: Failed to load interface for ‘Data.Array.Repa.ExtShape’ Perhaps you meant Data.Array.Repa.Shape (from repa-3.4.1.2) Data.Array.Repa.Base Data.Array.Repa.Eval (from repa-3.4.1.2) Use -v to see a list of the files searched for. cabal: Leaving directory '/tmp/cabal-tmp-12042/BiobaseXNA-0.8.3.0' Installed ADPfusion-0.5.2.0 cabal: Error: some packages failed to install: BiobaseTurner-0.3.1.1 depends on BiobaseXNA-0.8.3.0 which failed to install. BiobaseVienna-0.3.0.0 depends on BiobaseXNA-0.8.3.0 which failed to install. BiobaseXNA-0.8.3.0 failed during the building phase. The exception was: ExitFailure 1 RNAFold-1.99.3.4 depends on BiobaseXNA-0.8.3.0 which failed to install. RNAdesign-0.1.1.0 depends on BiobaseXNA-0.8.3.0 which failed to install.