úÎÜ Ú3      !"#$%&'()*+,-./012None:DORT3434Safe/Data structure for a Stockholm format alignment"  !""  !"" !"   !"None:DORT+,5-6.789:;<=>?/@ABCDE+,-./+/.,-+,5-6.789:;<=>?/@ABCDESafe1parse 2Bparse StockholmAlignment from input filePath F%Parse the input as StockholmAlignmentG%Parse the input as StockholmAlignmentH.Parse the input as StockholmAlignment datatype012FGHIJKLMNOPQRSTUVWXYZ[\]^_`a%  !"012012012FGHIJKLMNOPQRSTUVWXYZ[\]^_`ab       !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcd/StockholmAlignment-1.0.2-KDIxh7XIxsK8k9OC1swDEXBio.StockholmFontBio.StockholmDataBio.StockholmDrawBio.StockholmParserlinLibertineFontStockholmTokenTokFileATokColATokResATokSeqATokSeqfTagfInfocTagcInforIdrTagrInfoaIdaTagaInfosIdsSeqAnnotationEntrytag annotation SequenceEntry sequenceId entrySequencesequenceAnnotationresidueAnnotationStockholmAlignmentversionfileAnnotationscolumnAnnotationssequenceEntries$fShowAnnotationEntry$fEqAnnotationEntry$fShowSequenceEntry$fEqSequenceEntry$fShowStockholmAlignment$fEqStockholmAlignment$fShowStockholmToken$fEqStockholmTokendrawStockholmLinesextractGapfreeStructureisGapconvertWUSStoDotBracket drawStockholmreadExistingStockholmparseStockholm readStockholmlinLibertineFontTuplelinLibertineStringbasePairIndicesconvertToRegularGapconvertWUSSCharToDotBracketnodeToColIndicesfillComparisonColLabelsmakeFullComparisonColLabeldrawStockholmRowBlockdrawStockholmIndexLinedrawStockholmIndexLineColcolorBoxdrawStockholmEntryLinedrawStockholmEntrysetAlignmentLettermakeLetterIntervalssetAlignmentIntervalsetAlignmentLineIntervalmakeVectorEntriesgenParseStockholmsgenParseStockholm genParseTokengenParseTokFileAgenParseTokColAgenParseTokResAgenParseTokSeqAgenParseTokSeqtokenToStockholm isFileTok isColATok isResATok isSeqATokisSeqTokmergeFileToken buildFEntry mergeColToken buildCEntrymergeSeqATokenmergeSAIdTokenmergeSAIdTagTokenmergeResATokenmergeRAIdTokenmergeRAIdTagTokenbuildSeqEntries buildSeqEntry buildSAEntry buildRAEntry