úÎ î3      !"#$%&'()*+,-./012None:DORT3434Safe/Data structure for a Stockholm format alignment"  !""  !"" !"   !"None:DORT+,5-6.789:;<=>?/@ABCDEFG+,-./+/.,-+,5-6.789:;<=>?/@ABCDEFGSafe1parse 2Bparse StockholmAlignment from input filePath H%Parse the input as StockholmAlignmentI%Parse the input as StockholmAlignmentJ.Parse the input as StockholmAlignment datatype012HIJKLMNOPQRSTUVWXYZ[\]^_`abc%  !"012012012HIJKLMNOPQRSTUVWXYZ[\]^_`abcd       !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdef/StockholmAlignment-1.0.4-Amv6MUmc9oAASEFbWQ54ISBio.StockholmFontBio.StockholmDataBio.StockholmDrawBio.StockholmParserlinLibertineFontStockholmTokenTokFileATokColATokResATokSeqATokSeqfTagfInfocTagcInforIdrTagrInfoaIdaTagaInfosIdsSeqAnnotationEntrytag annotation SequenceEntry sequenceId entrySequencesequenceAnnotationresidueAnnotationStockholmAlignmentversionfileAnnotationscolumnAnnotationssequenceEntries$fShowAnnotationEntry$fEqAnnotationEntry$fShowSequenceEntry$fEqSequenceEntry$fShowStockholmAlignment$fEqStockholmAlignment$fShowStockholmToken$fEqStockholmTokendrawStockholmLinesextractGapfreeStructureisGapconvertWUSStoDotBracket drawStockholmreadExistingStockholmparseStockholm readStockholmlinLibertineFontTuplelinLibertineStringbasePairIndicesconvertToRegularGapconvertWUSSCharToDotBracketnodeToColIndicesfillComparisonColLabelsmakeFullComparisonColLabeldrawStockholmRowBlockdrawStockholmIndexLinedrawStockholmIndexLineColcolorBoxdrawStockholmEntryLinedrawConsensusStructureEntrydrawStockholmEntrysetAlignmentLettermakeLetterIntervalssetAlignmentIntervalsetAlignmentLineIntervalmakeVectorEntries!makeConsensusStructureVectorEntrygenParseStockholmsgenParseStockholm genParseTokengenParseTokFileAgenParseTokColAgenParseTokResAgenParseTokSeqAgenParseTokSeqtokenToStockholm isFileTok isColATok isResATok isSeqATokisSeqTokmergeFileToken buildFEntry mergeColToken buildCEntrymergeSeqATokenmergeSAIdTokenmergeSAIdTagTokenmergeResATokenmergeRAIdTokenmergeRAIdTagTokenbuildSeqEntries buildSeqEntry buildSAEntry buildRAEntry