úÎ 4      !"#$%&'()*+,-./0123None:DORT4545Safe/Data structure for a Stockholm format alignment"  !""  !"" !"   !"None:DORT+,-6.7/89:;<=>?0@ABCDEFG+,-./0+0/,-.+,-6.7/89:;<=>?0@ABCDEFGSafe2parse 3Bparse StockholmAlignment from input filePath H%Parse the input as StockholmAlignmentI%Parse the input as StockholmAlignmentJ.Parse the input as StockholmAlignment datatype123HIJKLMNOPQRSTUVWXYZ[\]^_`abc%  !"123123123HIJKLMNOPQRSTUVWXYZ[\]^_`abcd       !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdef/StockholmAlignment-1.1.0-2tL1KYWDaRmGnAoEZ5GRiTBio.StockholmFontBio.StockholmDataBio.StockholmDrawBio.StockholmParserlinLibertineFontStockholmTokenTokFileATokColATokResATokSeqATokSeqfTagfInfocTagcInforIdrTagrInfoaIdaTagaInfosIdsSeqAnnotationEntrytag annotation SequenceEntry sequenceId entrySequencesequenceAnnotationresidueAnnotationStockholmAlignmentversionfileAnnotationscolumnAnnotationssequenceEntries$fShowAnnotationEntry$fEqAnnotationEntry$fShowSequenceEntry$fEqSequenceEntry$fShowStockholmAlignment$fEqStockholmAlignment$fShowStockholmToken$fEqStockholmTokendrawStockholmLinesextractGapfreeStructureextractGapfreeIndexedStructureisGapconvertWUSStoDotBracket drawStockholmreadExistingStockholmparseStockholm readStockholmlinLibertineFontTuplelinLibertineStringbasePairIndicesconvertToRegularGapconvertWUSSCharToDotBracketfillComparisonColLabelsmakeFullComparisonColLabeldrawStockholmRowBlockdrawStockholmIndexLinedrawStockholmIndexLineColcolorBoxdrawStockholmEntryLinedrawConsensusStructureEntrydrawStockholmEntrysetAlignmentLettermakeLetterIntervalssetAlignmentIntervalsetAlignmentLineIntervalmakeVectorEntries!makeConsensusStructureVectorEntrygenParseStockholmsgenParseStockholm genParseTokengenParseTokFileAgenParseTokColAgenParseTokResAgenParseTokSeqAgenParseTokSeqtokenToStockholm isFileTok isColATok isResATok isSeqATokisSeqTokmergeFileToken buildFEntry mergeColToken buildCEntrymergeSeqATokenmergeSAIdTokenmergeSAIdTagTokenmergeResATokenmergeRAIdTokenmergeRAIdTagTokenbuildSeqEntries buildSeqEntry buildSAEntry buildRAEntry