name:           SuffixStructures
version:        0.0.1.0
author:         Christian Hoener zu Siederdissen
copyright:      Christian Hoener zu Siederdissen, 2014 - 2015
homepage:       http://www.bioinf.uni-leipzig.de/~choener/
maintainer:     choener@bioinf.uni-leipzig.de
category:       Data, Data Structures
license:        BSD3
license-file:   LICENSE
build-type:     Simple
stability:      experimental
cabal-version:  >= 1.10
tested-with:    GHC == 7.8.4, GHC == 7.10.1
synopsis:       Suffix array construction
description:
                Suffix array construction in Haskell. Currently, only a naive
                method is provided. More advanced construction methods might
                follow.



Extra-Source-Files:
  README.md
  changelog.md



flag llvm
  description: use llvm backend
  default: False
  manual:  True



library
  build-depends: base                    >= 4.7       && < 4.9
               , aeson                   == 0.8.*
               , binary                  == 0.7.*
               , bytestring              == 0.10.*
               , cereal                  == 0.4.*
               , containers              == 0.5.*
               , data-default-class      == 0.0.1
               , ListLike                >= 4.1.0.0   && < 4.3
               , primitive               >= 0.5       && < 0.7
               , vector                  == 0.10.*
               , vector-algorithms       == 0.6.*
               , vector-binary-instances == 0.2.*
  default-language:
    Haskell2010
  default-extensions: BangPatterns
                    , DeriveGeneric
                    , FlexibleContexts
                    , PatternGuards
                    , RankNTypes
                    , RecordWildCards
                    , TypeFamilies

  exposed-modules:
    Data.SuffixStructure.ESA
    Data.SuffixStructure.NaiveArray
  ghc-options:
    -O2 -funbox-strict-fields



executable mkesa
  build-depends: base
               , cmdargs            == 0.10.*
               , SuffixStructures
               , aeson
               , binary
               , containers
               , bytestring
               , cereal
               , vector
  default-language:
    Haskell2010
  hs-source-dirs:
    src
  main-is:
    mkesa.hs
  ghc-options:
    -O2 -funbox-strict-fields
  if flag(llvm)
    ghc-options:
      -fllvm -optlo-O3 -optlo-std-compile-opts



benchmark BenchmarkSuffixStructures
  build-depends: base
               , bytestring
               , cmdargs            == 0.10.*
               , criterion          == 1.1.*
               , deepseq
               , mwc-random         == 0.13.*
               , SuffixStructures
               , vector
  default-language:
    Haskell2010
  hs-source-dirs:
    src
  main-is:
    SAperformance.hs
  type:
    exitcode-stdio-1.0
  ghc-options:
    -O2 -funbox-strict-fields
  if flag(llvm)
    ghc-options:
      -fllvm -optlo-O3 -optlo-std-compile-opts



source-repository head
  type: git
  location: git://github.com/choener/SuffixStructures