name:                Taxonomy
version:             1.0.3
synopsis:            Libary for parsing, processing and vizualization of taxonomy data
description:         Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation
                     for the NCBI (National Center for Biotechnology Information) Taxonomy datasources.
                     .
                     It can utilize information from the <http://www.ncbi.nlm.nih.gov/taxonomy Entrez> REST interface via <https://github.com/eggzilla/EntrezHTTP EntrezHTTP>,
		     as well as from the files of the Taxonomy database <ftp://ftp.ncbi.nih.gov/pub/taxonomy/ dump>.
                     .
                     Input data is parsed into a FGL based datastructure, which enables a wealth of processing
		     steps like node distances, retrieval of parent nodes or extraction of
		     subtrees.
                     .
                     Trees can be visualised via dot-format (<http://graphviz.org/ graphviz>)
                     .
                     <<http://www.tbi.univie.ac.at/~egg/taxonomy.svg dot>> 
                     .
                     or via json-format (<http://d3js.org/d3js>).
		     .
		     The <https://hackage.haskell.org/package/TaxonomyTools TaxonomyTools> package contains tools based on this package.
                     
license:             GPL-3
license-file:        LICENSE
author:              Florian Eggenhofer
maintainer:          florian.eggenhofer@univie.ac.at
-- copyright:           
category:            Bioinformatics
build-type:          Simple
cabal-version:       >=1.8
Tested-With: GHC == 7.6.3, GHC == 7.8.4, GHC == 7.10.3, GHC == 8.0.2, GHC == 8.2.1
source-repository head
  type:     git
  location: https://github.com/eggzilla/Taxonomy

source-repository this
  type:     git
  location: https://github.com/eggzilla/Taxonomy/tree/v1.0.3
  tag:      v1.0.3

library
  -- Modules exported by the library.
  exposed-modules:   Bio.TaxonomyData, Bio.Taxonomy 
 
  -- compiler-options:
  ghc-options:         -Wall -fno-warn-unused-do-bind

  -- Other library packages from which modules are imported.
  build-depends:       base >=4.5 && <5, parsec, either-unwrap, fgl>=5.5.4.0, text, graphviz>=2999.12.0.4, bytestring, aeson, vector

  -- Directories containing source files.
  hs-source-dirs:      src