ViennaRNAParser-1.2.6: Libary for parsing ViennaRNA package output

Safe HaskellSafe-Inferred
LanguageHaskell98

Bio.ViennaRNAParserLibrary

Description

Library with auxiliary functions needed in multiple other modules.

Synopsis

Documentation

parseNucleotideSequence :: GenParser Char st String Source

Parse nucleotide sequence. Allowed letters according to IUPAC

parseNucleotideAlignmentEntry :: GenParser Char st String Source

Parse nucleotide alignment entry. Allowed letters according to IUPAC and commonly used gap characters

parseProteinSequence :: GenParser Char st String Source

Parse protein amino acid code sequence. Allowed letters according to IUPAC

parseProteinAlignmentEntry :: GenParser Char st String Source

Parse protein amino acid code alignment entry. Allowed letters according to IUPAC and commonly used gap characters