Bio.ViennaRNAParserLibrary

Library with auxiliary functions needed in multiple other modules.

Documentation

parseNucleotideSequence :: GenParser Char st String

Parse nucleotide sequence. Allowed letters according to IUPAC

parseNucleotideAlignmentEntry :: GenParser Char st String

Parse nucleotide alignment entry. Allowed letters according to IUPAC and commonly used gap characters

parseProteinSequence :: GenParser Char st String

Parse protein amino acid code sequence. Allowed letters according to IUPAC

parseProteinAlignmentEntry :: GenParser Char st String

Parse protein amino acid code alignment entry. Allowed letters according to IUPAC and commonly used gap characters

readInt :: String -> Int

readDouble :: String -> Double