bio-0.3.5: A bioinformatics librarySource codeContentsIndex
Bio.Sequence.TwoBit
Description

This module implements the 2bit format for sequences.

Based on: http://genome.ucsc.edu/FAQ/FAQformat#format7 Note! the description is not accurate, it is missing a reserved word in each sequence record.

There are also other, completely different ideas of the 2bit format, e.g. http://jcomeau.freeshell.org/www/genome/2bitformat.html

Synopsis
decode2Bit :: ByteString -> [Sequence]
read2Bit :: FilePath -> IO [Sequence]
hRead2Bit :: Handle -> IO [Sequence]
Documentation
decode2Bit :: ByteString -> [Sequence]Source
Parse a (lazy) ByteString as sequences in the 2bit format.
read2Bit :: FilePath -> IO [Sequence]Source
Extract sequences from a file in 2bit format.
hRead2Bit :: Handle -> IO [Sequence]Source
Extract sequences in the 2bit format from a handle.
Produced by Haddock version 2.4.2