bio-0.5: A bioinformatics library

Bio.GFF3.SGD

Documentation

chromosomes :: FeatureHierSequences -> [Feature]Source

genes :: FeatureHierSequences -> [Feature]Source

rRNAs :: FeatureHierSequences -> [Feature]Source

sortExons :: (Error e, MonadError e m) => [Feature] -> m [Feature]Source

geneSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a)Source

geneSeqLoc :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m SeqLoc Source

geneCDSes :: FeatureHierSequences -> Feature -> [Feature]Source

noncodingSequence :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m (Sequence a)Source

noncodingSeqLoc :: (Error e, MonadError e m) => FeatureHierSequences -> Feature -> m SeqLoc Source

noncodingExons :: FeatureHierSequences -> Feature -> [Feature]Source

namedSLM :: FeatureHierSequences -> SeqLocMap Feature Source

geneCDS_SLM :: (Error e, MonadError e m) => FeatureHierSequences -> m (SeqLocMap Feature)Source