bioinformatics-toolkit-0.10.0: A collection of bioinformatics tools

Safe Haskell	None
Language	Haskell2010

Bio.Utils.Overlap

Documentation

overlapFragment Source #

Arguments

:: [(Int, Int)]	Ascending order list
-> [(Int, Int)]	tags in any order
-> Vector Int

overlapNucl Source #

Arguments

:: [(Int, Int)]	Ascending order list
-> [(Int, Int)]	tags in any order
-> Vector Int

coverage Source #

Arguments

:: [BED]	genomic locus in BED format
-> ConduitT () BED IO ()	reads in BED format
-> IO (Vector Double, Int)