Bio.Data.Bed

class BEDLike b

BED6 format

data BED

BED3 format

data BED3

NarrowPeak format

data NarrowPeak

type BEDTree a

bedToTree

sortedBedToTree

intersecting

isIntersected

sizeOverlapped

splitBed

splitBedBySize

splitBedBySizeLeft

splitBedBySizeOverlap

data Sorted b

sortBed

intersectBed

intersectBedWith

intersectSortedBed

intersectSortedBedWith

isOverlapped

mergeBed

mergeBedWith

mergeSortedBed

mergeSortedBedWith

splitOverlapped

hReadBed

hReadBed'

readBed

readBed'

hWriteBed

hWriteBed'

writeBed

writeBed'

Utilities

fetchSeq

fetchSeq'

motifScan

getMotifScore

getMotifPValue

compareBed