bioinformatics-toolkit-0.5.0: A collection of bioinformatics tools

Safe HaskellNone
LanguageHaskell2010

Bio.Utils.Overlap

Documentation

overlapFragment Source #

Arguments

:: [(Int, Int)]

Ascending order list

-> [(Int, Int)]

tags in any order

-> Vector Int 

overlapNucl Source #

Arguments

:: [(Int, Int)]

Ascending order list

-> [(Int, Int)]

tags in any order

-> Vector Int 

coverage Source #

Arguments

:: [BED]

genomic locus in BED format

-> ConduitT () BED IO ()

reads in BED format

-> IO (Vector Double, Int)