Configuring biosff-0.3.7... Flags chosen: fclip=True, frecover=True, flower=True Dependency array ==0.4.0.1: using array-0.4.0.1 Dependency base ==4.6.0.1: using base-4.6.0.1 Dependency binary ==0.5.1.1: using binary-0.5.1.1 Dependency biocore ==0.3.1: using biocore-0.3.1 Dependency bytestring ==0.10.0.2: using bytestring-0.10.0.2 Dependency cmdargs ==0.10.5: using cmdargs-0.10.5 Dependency mtl ==2.1.2: using mtl-2.1.2 Using Cabal-1.16.0.3 compiled by ghc-7.6 Using compiler: ghc-7.6.3 Using install prefix: /srv/hackage/var/build/cache/inst Binaries installed in: /srv/hackage/var/build/cache/inst/bin Libraries installed in: /srv/hackage/var/build/cache/inst/lib/biosff-0.3.7/ghc-7.6.3 Private binaries installed in: /srv/hackage/var/build/cache/inst/libexec Data files installed in: /srv/hackage/var/build/cache/inst/share/biosff-0.3.7 Documentation installed in: /srv/hackage/var/build/cache/inst/share/doc/biosff-0.3.7 Using alex version 3.0.1 found on system at: /usr/bin/alex Using ar found on system at: /usr/bin/ar No c2hs found No cpphs found No ffihugs found Using gcc version 4.7 found on system at: /usr/bin/gcc Using ghc version 7.6.3 found on system at: /usr/local/bin/ghc Using ghc-pkg version 7.6.3 found on system at: /usr/local/bin/ghc-pkg No greencard found Using haddock version 2.13.2 found on system at: /usr/local/bin/haddock Using happy version 1.18.9 found on system at: /usr/bin/happy No hmake found Using hpc version 0.6 found on system at: /usr/local/bin/hpc Using hsc2hs version 0.67 found on system at: /usr/local/bin/hsc2hs Using hscolour version 1.19 found on system at: /usr/bin/HsColour No hugs found No jhc found Using ld found on system at: /usr/bin/ld No lhc found No lhc-pkg found No nhc98 found No pkg-config found Using ranlib found on system at: /usr/bin/ranlib Using strip found on system at: /usr/bin/strip Using tar found on system at: /bin/tar No uhc found creating dist/build creating dist/build/autogen Building biosff-0.3.7... Preprocessing library biosff-0.3.7... Building library... creating dist/build /usr/local/bin/ghc --make -fbuilding-cabal-package -odir dist/build -hidir dist/build -stubdir dist/build -i -idist/build -isrc -idist/build/autogen -Idist/build/autogen -Idist/build -optP-include -optPdist/build/autogen/cabal_macros.h -package-name biosff-0.3.7 -hide-all-packages -package-db /srv/hackage/var/build/cache/inst/local.conf.d -package-db dist/package.conf.inplace -package-id array-0.4.0.1-3b78425c10ff2dad7acf7e8c8ae014c3 -package-id base-4.6.0.1-8aa5d403c45ea59dcd2c39f123e27d57 -package-id binary-0.5.1.1-72ed744c57c32286a49da6dda4f660b7 -package-id biocore-0.3.1-844338491e9820bc91c6fb7f50c146c5 -package-id bytestring-0.10.0.2-4f93248f75667c2c3321a7a6761b576f -package-id cmdargs-0.10.5-e8b67b60f45290a711fd0a44f15fd8df -package-id mtl-2.1.2-94c72af955e94b8d7b2f359dadd0cb62 -XHaskell98 Bio.Sequence.SFF Bio.Sequence.SFF_filters Bio.Sequence.SFF_name -Wall -O0 [1 of 3] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/Bio/Sequence/SFF_name.o ) [2 of 3] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/Bio/Sequence/SFF.o ) [3 of 3] Compiling Bio.Sequence.SFF_filters ( src/Bio/Sequence/SFF_filters.hs, dist/build/Bio/Sequence/SFF_filters.o ) Linking... /usr/bin/ar -r dist/build/libHSbiosff-0.3.7.a dist/build/Bio/Sequence/SFF.o dist/build/Bio/Sequence/SFF_filters.o dist/build/Bio/Sequence/SFF_name.o /usr/bin/ar: creating dist/build/libHSbiosff-0.3.7.a In-place registering biosff-0.3.7... /usr/local/bin/ghc-pkg update - --global --user --package-db=/srv/hackage/var/build/cache/inst/local.conf.d --package-db=dist/package.conf.inplace --no-user-package-conf Preprocessing executable 'frecover' for biosff-0.3.7... Building executable frecover... creating dist/build/frecover creating dist/build/frecover/frecover-tmp /usr/local/bin/ghc --make -fbuilding-cabal-package -odir dist/build/frecover/frecover-tmp -hidir dist/build/frecover/frecover-tmp -stubdir dist/build/frecover/frecover-tmp -i -idist/build/frecover/frecover-tmp -isrc -isrc/FRecover -idist/build/autogen -Idist/build/autogen -Idist/build/frecover/frecover-tmp -optP-include -optPdist/build/autogen/cabal_macros.h -hide-all-packages -package-db /srv/hackage/var/build/cache/inst/local.conf.d -package-db dist/package.conf.inplace -package-id array-0.4.0.1-3b78425c10ff2dad7acf7e8c8ae014c3 -package-id base-4.6.0.1-8aa5d403c45ea59dcd2c39f123e27d57 -package-id binary-0.5.1.1-72ed744c57c32286a49da6dda4f660b7 -package-id biocore-0.3.1-844338491e9820bc91c6fb7f50c146c5 -package-id bytestring-0.10.0.2-4f93248f75667c2c3321a7a6761b576f -package-id cmdargs-0.10.5-e8b67b60f45290a711fd0a44f15fd8df -package-id mtl-2.1.2-94c72af955e94b8d7b2f359dadd0cb62 -XHaskell98 src/FRecover/Main.hs -o dist/build/frecover/frecover -Wall -O0 [1 of 3] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/frecover/frecover-tmp/Bio/Sequence/SFF_name.o ) [2 of 3] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/frecover/frecover-tmp/Bio/Sequence/SFF.o ) [3 of 3] Compiling Main ( src/FRecover/Main.hs, dist/build/frecover/frecover-tmp/Main.o ) Linking dist/build/frecover/frecover ... Preprocessing executable 'flower' for biosff-0.3.7... Building executable flower... creating dist/build/flower creating dist/build/flower/flower-tmp /usr/local/bin/ghc --make -fbuilding-cabal-package -odir dist/build/flower/flower-tmp -hidir dist/build/flower/flower-tmp -stubdir dist/build/flower/flower-tmp -i -idist/build/flower/flower-tmp -isrc -isrc/Flower -idist/build/autogen -Idist/build/autogen -Idist/build/flower/flower-tmp -optP-include -optPdist/build/autogen/cabal_macros.h -hide-all-packages -package-db /srv/hackage/var/build/cache/inst/local.conf.d -package-db dist/package.conf.inplace -package-id array-0.4.0.1-3b78425c10ff2dad7acf7e8c8ae014c3 -package-id base-4.6.0.1-8aa5d403c45ea59dcd2c39f123e27d57 -package-id binary-0.5.1.1-72ed744c57c32286a49da6dda4f660b7 -package-id biocore-0.3.1-844338491e9820bc91c6fb7f50c146c5 -package-id bytestring-0.10.0.2-4f93248f75667c2c3321a7a6761b576f -package-id cmdargs-0.10.5-e8b67b60f45290a711fd0a44f15fd8df -package-id mtl-2.1.2-94c72af955e94b8d7b2f359dadd0cb62 -XHaskell98 src/Flower/Main.hs -o dist/build/flower/flower -Wall -O0 [1 of 8] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF_name.o ) [2 of 8] Compiling Fork ( src/Flower/Fork.hs, dist/build/flower/flower-tmp/Fork.o ) [3 of 8] Compiling Options ( src/Flower/Options.hs, dist/build/flower/flower-tmp/Options.o ) [4 of 8] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF.o ) [5 of 8] Compiling Bio.Sequence.SFF_filters ( src/Bio/Sequence/SFF_filters.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF_filters.o ) [6 of 8] Compiling Metrics ( src/Flower/Metrics.hs, dist/build/flower/flower-tmp/Metrics.o ) [7 of 8] Compiling Print ( src/Flower/Print.hs, dist/build/flower/flower-tmp/Print.o ) [8 of 8] Compiling Main ( src/Flower/Main.hs, dist/build/flower/flower-tmp/Main.o ) src/Flower/Main.hs:76:1: Warning: Defined but not used: `isEmpty' src/Flower/Main.hs:76:1: Warning: Top-level binding with no type signature: isEmpty :: forall t. t -> Bool src/Flower/Main.hs:76:9: Warning: Defined but not used: `r' Linking dist/build/flower/flower ... Preprocessing executable 'fclip' for biosff-0.3.7... Building executable fclip... creating dist/build/fclip creating dist/build/fclip/fclip-tmp /usr/local/bin/ghc --make -fbuilding-cabal-package -odir dist/build/fclip/fclip-tmp -hidir dist/build/fclip/fclip-tmp -stubdir dist/build/fclip/fclip-tmp -i -idist/build/fclip/fclip-tmp -isrc -isrc/FClip -idist/build/autogen -Idist/build/autogen -Idist/build/fclip/fclip-tmp -optP-include -optPdist/build/autogen/cabal_macros.h -hide-all-packages -package-db /srv/hackage/var/build/cache/inst/local.conf.d -package-db dist/package.conf.inplace -package-id array-0.4.0.1-3b78425c10ff2dad7acf7e8c8ae014c3 -package-id base-4.6.0.1-8aa5d403c45ea59dcd2c39f123e27d57 -package-id binary-0.5.1.1-72ed744c57c32286a49da6dda4f660b7 -package-id biocore-0.3.1-844338491e9820bc91c6fb7f50c146c5 -package-id bytestring-0.10.0.2-4f93248f75667c2c3321a7a6761b576f -package-id cmdargs-0.10.5-e8b67b60f45290a711fd0a44f15fd8df -package-id mtl-2.1.2-94c72af955e94b8d7b2f359dadd0cb62 -XHaskell98 src/FClip/Main.hs -o dist/build/fclip/fclip -Wall -O0 src/FClip/Main.hs:4:18: Could not find module `Options' Use -v to see a list of the files searched for.