Name:                biostockholm
Version:             0.3
Synopsis:            Parsing and rendering of Stockholm files (used by Pfam, Rfam and Infernal).
License:             BSD3
License-file:        LICENSE
Author:              Felipe Lessa
Maintainer:          felipe.lessa@gmail.com
Category:            Bioinformatics
Build-type:          Simple
Cabal-version:       >=1.8
Extra-source-files:
  benchmarks/benchmark_v0.1.hs
  benchmarks/benchmark_v0.2.hs
  tests/runtests.hs
Description:
  Parsing and rendering of files in Stockholm 1.0 format.  Among
  the users of the Stockholm format are Pfam, Rfam and Infernal.
  These files hold information about families of proteins or
  non-coding RNAs.  For more information, please see:
  .
  * <http://sonnhammer.sbc.su.se/Stockholm.html>
  .
  * <ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/relnotes.txt>
  .
  * <http://en.wikipedia.org/wiki/Stockholm_format>

Source-repository head
  Type:     darcs
  Location: http://patch-tag.com/r/felipe/biostockholm

Library
  Hs-Source-Dirs: src
  Exposed-modules:
    Bio.Sequence.Stockholm
    Bio.Sequence.Stockholm.Document
    Bio.Sequence.Stockholm.Stream
  Ghc-Options: -Wall
  Build-depends:
        base               >= 3     && < 5
      , containers         >= 0.2   && < 0.5
      , bytestring         == 0.9.*
      , deepseq            >= 1.1   && < 1.4
      , conduit            == 0.4.*
      , attoparsec         == 0.10.*
      , attoparsec-conduit == 0.4.*
      , blaze-builder      == 0.3.*
      , blaze-builder-conduit == 0.4.*

      , biocore            >= 0.1   && < 0.3

Test-suite runtests
  Type: exitcode-stdio-1.0
  Hs-Source-Dirs: tests
  Main-is: runtests.hs
  Ghc-Options: -Wall
  Build-depends:
        base
      , containers
      , bytestring
      , conduit
      , zlib-conduit
      , biocore

      , transformers       >= 0.2
      , hspec              == 0.9.*
      , HUnit
      , QuickCheck
      , biostockholm