Utility

Documentation

getSeq :: FastaSequence -> [AA]

Extract sequence from a fasta sequence

sortTuple :: Ord a => (a, a) -> (a, a)

Sort a tuple

nub' :: Ord a => [a] -> [a]

Faster nub

groupBlocks :: Maybe Field -> [FastaSequence] -> [[FastaSequence]]

Group together fasta entires by a field

cutEnds :: Seq a -> Seq a

Cut off the ends of a sequence

sumMap :: (Ord a, Num b) => Map a b -> b

Sum up a map