name: cmv version: 1.0.8 synopsis: Detailed visualization of CMs, HMMs and their comparisions description: cmv is a collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family models (CMV). Moreover it can visualise comparisons of these models (HMMCV,CMCV), and annotate linked regions in the structural alignments they were constructed from and via, 3rd party tools, in their consensus secondary structure. license: GPL-3 license-file: LICENSE author: Florian Eggenhofer maintainer: egg@informatik.uni-freiburg.de Tested-With: GHC == 8.0.2, GHC == 8.2.2 category: Bioinformatics build-type: Simple cabal-version: >=1.8 extra-source-files: README.md changelog source-repository head type: git location: https://github.com/eggzilla/cmv source-repository this type: git location: https://github.com/eggzilla/cmv/tree/1.0.8 tag: 1.0.8 library -- Modules exported by the library. exposed-modules: Bio.CMDraw Bio.CMCompareResult -- compiler-options: ghc-options: -Wall -- Other library packages from which modules are imported. build-depends: base >=4.5 && <5, parsec>=3.1.9, diagrams-lib, BiobaseInfernal, text, vector, ParsecTools, diagrams-cairo, filepath, colour, PrimitiveArray, BiobaseXNA, mtl, directory, either-unwrap, SVGFonts>=1.6.0.2, BioHMM>=1.2.0, StockholmAlignment>=1.1.2, BiobaseTypes,containers,diagrams-core -- Directories containing source files. hs-source-dirs: src executable CMCV Hs-Source-Dirs: ./src/cmcv/ main-is: CMCVisualisation.hs ghc-options: -Wall build-depends: base >=4.5, cmdargs, BiobaseInfernal==0.8.1.0, BiobaseXNA, diagrams-lib>=1.4.1.2, parsec, colour, containers, bytestring, template-haskell, text, vector, directory, cmv, either-unwrap, filepath, StockholmAlignment>=1.1.2 executable CMV Hs-Source-Dirs: ./src/cmv/ main-is: CMVisualisation.hs ghc-options: -Wall build-depends: base >=4.5, cmdargs, BiobaseInfernal==0.8.1.0, BiobaseXNA, diagrams-lib, parsec, colour, containers, bytestring, template-haskell, text, vector, directory, cmv, either-unwrap, filepath, StockholmAlignment>=1.1.2 executable CMCWStoCMCV Hs-Source-Dirs: ./src/cmcv/ main-is: cmcwsvtocmcv.hs ghc-options: -Wall build-depends: base >=4.5, cmdargs, BiobaseInfernal==0.8.1.0, BiobaseXNA, diagrams-lib, parsec, colour, containers, bytestring, template-haskell, text, vector, directory, cmv, either-unwrap, filepath executable CMCtoHMMC Hs-Source-Dirs: ./src/cmcv/ main-is: cmctohmmc.hs ghc-options: -Wall build-depends: base >=4.5, cmdargs, BiobaseInfernal==0.8.1.0, BiobaseXNA, diagrams-lib, parsec, colour, containers, bytestring, template-haskell, text, vector, directory, cmv, either-unwrap, filepath, BioHMM>=1.2.0 executable HMMCtoCMC Hs-Source-Dirs: ./src/cmcv/ main-is: hmmctocmc.hs ghc-options: -Wall build-depends: base >=4.5, cmdargs, BiobaseInfernal==0.8.1.0, BiobaseXNA, diagrams-lib, parsec, colour, containers, bytestring, template-haskell, text, vector, directory, cmv, either-unwrap, filepath, BioHMM>=1.2.0 executable CMVJson Hs-Source-Dirs: ./src/cmv/ main-is: CMVJson.hs ghc-options: -Wall build-depends: base >=4.5, cmdargs, BiobaseInfernal==0.8.1.0, BiobaseXNA, containers, bytestring, template-haskell, text, vector, directory, cmv, either-unwrap, filepath, aeson executable HMMCV Hs-Source-Dirs: ./src/hmmcv/ main-is: HMMCVisualisation.hs ghc-options: -Wall build-depends: base >=4.5, cmdargs, diagrams-lib, parsec, colour, containers, bytestring, text, vector, directory, cmv, either-unwrap, filepath, BioHMM>=1.2.0, StockholmAlignment>=1.1.2 executable HMMV Hs-Source-Dirs: ./src/hmmv/ main-is: HMMVisualisation.hs ghc-options: -Wall build-depends: base >=4.5, cmdargs, diagrams-lib, parsec, colour, containers, bytestring, text, vector, directory, cmv, either-unwrap, filepath, BioHMM>=1.2.0, StockholmAlignment>=1.1.2