cobot-io-0.1.3.2: Biological data file formats and IO

Index

!Bio.Sequence.Functions.Sequence, Bio.Sequence
!?Bio.Sequence.Functions.Sequence, Bio.Sequence
AbsentBio.MAE.Type, Bio.MAE
AC 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
acBio.Uniprot.Type, Bio.Uniprot
accessionBio.GB.Type, Bio.GB
accessionNumbersBio.Uniprot.Type, Bio.Uniprot
addMarkingsBio.Sequence.Functions.Marking, Bio.Sequence
AGRICOLABio.Uniprot.Type, Bio.Uniprot
AllergenBio.Uniprot.Type, Bio.Uniprot
AlphaHelixBio.Structure
altLocListBio.MMTF.Type, Bio.MMTF
AltName 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Parser
altNamesBio.Uniprot.Type, Bio.Uniprot
ArcheaBio.Uniprot.Type, Bio.Uniprot
asBinaryBio.MMTF.Decode.MessagePack
asCharBio.MMTF.Decode.MessagePack
asFloatBio.MMTF.Decode.MessagePack
asFloatListBio.MMTF.Decode.MessagePack
asIntBio.MMTF.Decode.MessagePack
asIntListBio.MMTF.Decode.MessagePack
asObjectListBio.MMTF.Decode.MessagePack
Assembly 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
assemblyNameBio.MMTF.Type, Bio.MMTF
asStrBio.MMTF.Decode.MessagePack
asStrListBio.MMTF.Decode.MessagePack
Atom 
1 (Type/Class)Bio.PDB.Type
2 (Data Constructor)Bio.PDB.Type
3 (Type/Class)Bio.Structure
4 (Data Constructor)Bio.Structure
atom 
1 (Function)Bio.MMTF.Type, Bio.MMTF
2 (Function)Bio.Structure.Functions
atomAltLocBio.PDB.Type
atomChainIDBio.PDB.Type
atomChargeBio.PDB.Type
atomCoordsBio.Structure
AtomData 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
atomDataBio.MMTF.Decode
atomElement 
1 (Function)Bio.PDB.Type
2 (Function)Bio.Structure
atomICodeBio.PDB.Type
atomIdBio.Structure
atomIdListBio.MMTF.Type, Bio.MMTF
atomInputIndexBio.Structure
atomName 
1 (Function)Bio.PDB.Type
2 (Function)Bio.Structure
atomOccupancyBio.PDB.Type
atomResNameBio.PDB.Type
atomResSeqBio.PDB.Type
atomsBio.Structure
atomSerialBio.PDB.Type
atomTempFactorBio.PDB.Type
atomXBio.PDB.Type
atomYBio.PDB.Type
atomZBio.PDB.Type
atPBio.MMTF.Decode.MessagePack
atPMBio.MMTF.Decode.MessagePack
atPMDBio.MMTF.Decode.MessagePack
AUTHORBio.PDB.Type
authorsBio.GB.Type, Bio.GB
BacteriaBio.Uniprot.Type, Bio.Uniprot
BareSequenceBio.Sequence.Class, Bio.Sequence
bareSequenceBio.Sequence.Class, Bio.Sequence
BasecalledSequence 
1 (Type/Class)Bio.Sequence.Basecalled.Type, Bio.Sequence.Basecalled
2 (Data Constructor)Bio.Sequence.Basecalled.Type, Bio.Sequence.Basecalled
BDBio.MMTF.Decode.Codec
BendBio.Structure
bFactorBio.Structure
bFactorListBio.MMTF.Type, Bio.MMTF
BibliographicDBBio.Uniprot.Type, Bio.Uniprot
binaryCodecBio.MMTF.Decode.Codec
BinaryDataBio.MMTF.Decode.Codec
binaryDataBio.MMTF.Decode.Codec
binaryLengthBio.MMTF.Decode.Codec
binaryParamBio.MMTF.Decode.Codec
bioAssemblyBio.MMTF.Decode
bioAssemblyListBio.MMTF.Type, Bio.MMTF
BiotechBio.Uniprot.Type, Bio.Uniprot
Block 
1 (Type/Class)Bio.MAE.Type, Bio.MAE
2 (Data Constructor)Bio.MAE.Type, Bio.MAE
blockNameBio.MAE.Type, Bio.MAE
blockPBio.MAE.Parser
blocksBio.MAE.Type, Bio.MAE
Bond 
1 (Type/Class)Bio.Structure
2 (Data Constructor)Bio.Structure
bondAtomListBio.MMTF.Type, Bio.MMTF
bondEndBio.Structure
bondOrderBio.Structure
bondOrderListBio.MMTF.Type, Bio.MMTF
bondStartBio.Structure
BoolMaeValueBio.MAE.Type, Bio.MAE
BridgeBio.Structure
c2sBio.MMTF.Decode
CAVEATBio.PDB.Type
CC 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
ccBio.Uniprot.Type, Bio.Uniprot
CDAntigenBio.Uniprot.Type, Bio.Uniprot
Chain 
1 (Type/Class)Bio.PDB.Type
2 (Type/Class)Bio.Structure
3 (Data Constructor)Bio.Structure
chain 
1 (Function)Bio.MMTF.Type, Bio.MMTF
2 (Function)Bio.Structure.Functions
ChainData 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
chainDataBio.MMTF.Decode
chainIdListBio.MMTF.Type, Bio.MMTF
chainIndexListBio.MMTF.Type, Bio.MMTF
chainNameBio.Structure
chainNameListBio.MMTF.Type, Bio.MMTF
chainResiduesBio.Structure
chainsBio.Structure
chainsPerModelBio.MMTF.Type, Bio.MMTF
checkRangeBio.Sequence.Utilities
CircularBio.GB.Type, Bio.GB
CISPEPBio.PDB.Type
cleanBio.ABI.Clean, Bio.ABI
CleanableBio.ABI.Clean, Bio.ABI
cleanWithBio.ABI.Clean, Bio.ABI
codeBio.Uniprot.Type, Bio.Uniprot
codec1Bio.MMTF.Decode.Codec
codec10Bio.MMTF.Decode.Codec
codec11Bio.MMTF.Decode.Codec
codec12Bio.MMTF.Decode.Codec
codec13Bio.MMTF.Decode.Codec
codec14Bio.MMTF.Decode.Codec
codec15Bio.MMTF.Decode.Codec
codec2Bio.MMTF.Decode.Codec
codec3Bio.MMTF.Decode.Codec
codec4Bio.MMTF.Decode.Codec
codec5Bio.MMTF.Decode.Codec
codec6Bio.MMTF.Decode.Codec
codec7Bio.MMTF.Decode.Codec
codec8Bio.MMTF.Decode.Codec
codec9Bio.MMTF.Decode.Codec
codecCommonBio.MMTF.Decode.Codec
CoilBio.Structure
commentBio.Uniprot.Type, Bio.Uniprot
commentsBio.GB.Type, Bio.GB
commonNameBio.Uniprot.Type, Bio.Uniprot
COMPNDBio.PDB.Type
containsBio.Uniprot.Type, Bio.Uniprot
ContainsMarkingBio.Sequence.Class, Bio.Sequence
ContainsNoMarkingBio.Sequence.Class, Bio.Sequence
ContainsNoWeightBio.Sequence.Class, Bio.Sequence
ContainsWeightBio.Sequence.Class, Bio.Sequence
contentsBio.MAE.Type, Bio.MAE
copyrightCCBio.Uniprot.Parser
crc64Bio.Uniprot.Type, Bio.Uniprot
createSequenceBio.Sequence.Class, Bio.Sequence
CRYST1Bio.PDB.Type
CTerminalEPBio.Uniprot.Type, Bio.Uniprot
databaseQualifierBio.Uniprot.Type, Bio.Uniprot
dbIntegrationDateBio.Uniprot.Type, Bio.Uniprot
dbNameBio.Uniprot.Type, Bio.Uniprot
DBREFBio.PDB.Type
DBREF1Bio.PDB.Type
DBREF2Bio.PDB.Type
DE 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
deBio.Uniprot.Type, Bio.Uniprot
decodeBio.MMTF
definitionBio.GB.Type, Bio.GB
deltaDecBio.MMTF.Decode.Codec
depositionDateBio.MMTF.Type, Bio.MMTF
descriptionBio.Uniprot.Type, Bio.Uniprot
DOIBio.Uniprot.Type, Bio.Uniprot
DR 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
drBio.Uniprot.Type, Bio.Uniprot
dropBio.Sequence.Functions.Sequence, Bio.Sequence
DT 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
dtBio.Uniprot.Type, Bio.Uniprot
ecNumberBio.Uniprot.Type, Bio.Uniprot
edgeThresholdBio.ABI.Clean, Bio.ABI
ElementBio.Sequence.Class, Bio.Sequence
EndpointBio.Uniprot.Type, Bio.Uniprot
Entity 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
entityBio.MMTF.Decode
entityChainIndexListBio.MMTF.Type, Bio.MMTF
entityDescriptionBio.MMTF.Type, Bio.MMTF
entityListBio.MMTF.Type, Bio.MMTF
entitySequenceBio.MMTF.Type, Bio.MMTF
entityTypeBio.MMTF.Type, Bio.MMTF
entryNameBio.Uniprot.Type, Bio.Uniprot
entryVersionBio.Uniprot.Type, Bio.Uniprot
entryVersionDateBio.Uniprot.Type, Bio.Uniprot
EukaryotaBio.Uniprot.Type, Bio.Uniprot
evidenceBio.Uniprot.Type, Bio.Uniprot
EvidenceAtProteinLevelBio.Uniprot.Type, Bio.Uniprot
EvidenceAtTranscriptLevelBio.Uniprot.Type, Bio.Uniprot
ExactEPBio.Uniprot.Type, Bio.Uniprot
EXPDTABio.PDB.Type
experimentalMethodsBio.MMTF.Type, Bio.MMTF
ExtendedBio.Structure
FastaBio.FASTA.Type, Bio.FASTA
FastaItem 
1 (Type/Class)Bio.FASTA.Type, Bio.FASTA
2 (Data Constructor)Bio.FASTA.Type, Bio.FASTA
fastaPBio.FASTA.Parser, Bio.FASTA
fastaToTextBio.FASTA.Writer
Feature 
1 (Type/Class)Bio.GB.Type, Bio.GB
2 (Data Constructor)Bio.GB.Type, Bio.GB
fetch 
1 (Function)Bio.MMTF
2 (Function)Bio.Uniprot
FieldDataBio.PDB.Type
fieldsBio.MAE.Type, Bio.MAE
FieldTypeBio.PDB.Type
filterAtomsOfModelBio.Structure.Functions
FlagBio.Uniprot.Type, Bio.Uniprot
FlagsBio.Uniprot.Parser
flagsBio.Uniprot.Type, Bio.Uniprot
fNameBio.GB.Type, Bio.GB
FormBio.GB.Type, Bio.GB
formBio.GB.Type, Bio.GB
formalChargeBio.Structure
formatBio.MMTF.Type, Bio.MMTF
FormatData 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
formatDataBio.MMTF.Decode
FORMULBio.PDB.Type
fPropsBio.GB.Type, Bio.GB
FragmentBio.Uniprot.Type, Bio.Uniprot
FragmentsBio.Uniprot.Type, Bio.Uniprot
frameSizeBio.ABI.Clean, Bio.ABI
fromEPBio.Uniprot.Type, Bio.Uniprot
fromFile 
1 (Function)Bio.GB
2 (Function)Bio.FASTA
3 (Function)Bio.MAE
fromFilePDBBio.PDB.Reader
FromMaeValueBio.MAE.Type, Bio.MAE
fromMaeValueBio.MAE.Type, Bio.MAE
fromSequenceBio.Sequence.Class, Bio.Sequence
fromText 
1 (Function)Bio.GB
2 (Function)Bio.MAE
fromTextPDBBio.PDB.Reader
fStrand53Bio.GB.Type, Bio.GB
FT 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
ftBio.Uniprot.Type, Bio.Uniprot
fullNameBio.Uniprot.Type, Bio.Uniprot
gbDivisionBio.GB.Type, Bio.GB
gbIdBio.GB.Type, Bio.GB
gbSeqBio.GB.Type, Bio.GB
genBankPBio.GB.Parser, Bio.GB
GenBankSequence 
1 (Type/Class)Bio.GB.Type, Bio.GB
2 (Data Constructor)Bio.GB.Type, Bio.GB
genBankToTextBio.GB.Writer
geneNameBio.Uniprot.Type, Bio.Uniprot
getGlobalIDBio.Structure
getLocalIDBio.Structure
getMarkingBio.Sequence.Functions.Marking, Bio.Sequence
getRangeBio.Sequence.Functions.Sequence, Bio.Sequence
getWeightBio.Sequence.Functions.Weight, Bio.Sequence
getWeightsBio.Sequence.Functions.Weight, Bio.Sequence
globalBondBio.Structure.Functions
globalBondsBio.Structure
GlobalID 
1 (Type/Class)Bio.Structure
2 (Data Constructor)Bio.Structure
GN 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
gnBio.Uniprot.Type, Bio.Uniprot
groupBio.MMTF.Type, Bio.MMTF
groupChainByResidueBio.PDB.Functions
GroupData 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
groupDataBio.MMTF.Decode
groupIdListBio.MMTF.Type, Bio.MMTF
groupListBio.MMTF.Type, Bio.MMTF
groupsPerChainBio.MMTF.Type, Bio.MMTF
GroupType 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
groupTypeBio.MMTF.Decode
groupTypeListBio.MMTF.Type, Bio.MMTF
gtAtomNameListBio.MMTF.Type, Bio.MMTF
gtBondAtomListBio.MMTF.Type, Bio.MMTF
gtBondOrderListBio.MMTF.Type, Bio.MMTF
gtChemCompTypeBio.MMTF.Type, Bio.MMTF
gtElementListBio.MMTF.Type, Bio.MMTF
gtFormalChargeListBio.MMTF.Type, Bio.MMTF
gtGroupNameBio.MMTF.Type, Bio.MMTF
gtSingleLetterCodeBio.MMTF.Type, Bio.MMTF
HEADERBio.PDB.Type
HELIXBio.PDB.Type
HETBio.PDB.Type
HETNAMBio.PDB.Type
HETSYNBio.PDB.Type
hostNameBio.Uniprot.Type, Bio.Uniprot
HydrogenosomeBio.Uniprot.Type, Bio.Uniprot
hyphenConcatBio.Uniprot.Parser
ID 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
idBio.Uniprot.Type, Bio.Uniprot
includesBio.Uniprot.Type, Bio.Uniprot
InferredFromHomologyBio.Uniprot.Type, Bio.Uniprot
INNBio.Uniprot.Type, Bio.Uniprot
innerThresholdBio.ABI.Clean, Bio.ABI
insCodeListBio.MMTF.Type, Bio.MMTF
integerDecBio.MMTF.Decode.Codec
IntMaeValueBio.MAE.Type, Bio.MAE
IsBareSequenceBio.Sequence.Class, Bio.Sequence
IsMarkedSequenceBio.Sequence.Class, Bio.Sequence
IsMarkingBio.Sequence.Class, Bio.Sequence
IsSequenceBio.Sequence.Class, Bio.Sequence
IsWeightBio.Sequence.Class, Bio.Sequence
IsWeightedSequenceBio.Sequence.Class, Bio.Sequence
journalBio.GB.Type, Bio.GB
JRNLBio.PDB.Type
keyNameBio.Uniprot.Type, Bio.Uniprot
KEYWDSBio.PDB.Type
keywords 
1 (Function)Bio.GB.Type, Bio.GB
2 (Function)Bio.Uniprot.Type, Bio.Uniprot
KingdomBio.Uniprot.Type, Bio.Uniprot
kingdomBio.Uniprot.Type, Bio.Uniprot
KW 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
kwBio.Uniprot.Type, Bio.Uniprot
l2plBio.MMTF.Decode
l2vBio.MMTF.Decode
len 
1 (Function)Bio.GB.Type, Bio.GB
2 (Function)Bio.Uniprot.Type, Bio.Uniprot
lengthBio.Sequence.Functions.Sequence, Bio.Sequence
LinearBio.GB.Type, Bio.GB
LineTooLongBio.PDB.Reader
LineTooShortBio.PDB.Reader
LINKBio.PDB.Type
listMarkingsBio.Sequence.Functions.Marking, Bio.Sequence
localBondBio.Structure.Functions
localBondsBio.Structure
LocalID 
1 (Type/Class)Bio.Structure
2 (Data Constructor)Bio.Structure
Locus 
1 (Type/Class)Bio.GB.Type, Bio.GB
2 (Data Constructor)Bio.GB.Type, Bio.GB
locusBio.GB.Type, Bio.GB
M44 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
m44DecBio.MMTF.Decode.Codec
Mae 
1 (Type/Class)Bio.MAE.Type, Bio.MAE
2 (Data Constructor)Bio.MAE.Type, Bio.MAE
maePBio.MAE.Parser, Bio.MAE
MaeValueBio.MAE.Type, Bio.MAE
MarkedSequenceBio.Sequence.Class, Bio.Sequence
markedSequenceBio.Sequence.Class, Bio.Sequence
MarkingBio.Sequence.Class, Bio.Sequence
markingsBio.Sequence.Class, Bio.Sequence
MASTERBio.PDB.Type
matrixBio.MMTF.Type, Bio.MMTF
MDLTYPBio.PDB.Type
meanBio.Sequence.Functions.Weight, Bio.Sequence
meanInRangeBio.Sequence.Functions.Weight, Bio.Sequence
MEDLINEBio.Uniprot.Type, Bio.Uniprot
Meta 
1 (Type/Class)Bio.GB.Type, Bio.GB
2 (Data Constructor)Bio.GB.Type, Bio.GB
metaBio.GB.Type, Bio.GB
MitochondrionBio.Uniprot.Type, Bio.Uniprot
MMTF 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
mmtfProducerBio.MMTF.Type, Bio.MMTF
mmtfVersionBio.MMTF.Type, Bio.MMTF
Model 
1 (Type/Class)Bio.PDB.Type
2 (Type/Class)Bio.Structure
3 (Data Constructor)Bio.Structure
modelBio.MMTF.Type, Bio.MMTF
modelBondsBio.Structure
modelChainsBio.Structure
ModelData 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
modelDataBio.MMTF.Decode
modelsBio.PDB.Type
modelsFromMaeFileBio.MAE
modelsFromMaeTextBio.MAE
modelsFromPDBFileBio.PDB
modelsFromPDBTextBio.PDB
modelsOfBio.Structure
modificationDateBio.GB.Type, Bio.GB
MODRESBio.PDB.Type
molTypeBio.GB.Type, Bio.GB
molWeightBio.Uniprot.Type, Bio.Uniprot
MonadFailBio.MMTF.Decode.MessagePack
MTRIX1Bio.PDB.Type
MTRIX2Bio.PDB.Type
MTRIX3Bio.PDB.Type
Name 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
name 
1 (Function)Bio.GB.Type, Bio.GB
2 (Function)Bio.FASTA.Type, Bio.FASTA
NameTypeBio.Uniprot.Parser
ncsOperatorListBio.MMTF.Type, Bio.MMTF
nodesBio.Uniprot.Type, Bio.Uniprot
NoneBio.Uniprot.Parser
NTerminalEPBio.Uniprot.Type, Bio.Uniprot
NucleomorphBio.Uniprot.Type, Bio.Uniprot
nullBio.Sequence.Functions.Sequence, Bio.Sequence
numAtomsBio.MMTF.Type, Bio.MMTF
numberBio.Uniprot.Type, Bio.Uniprot
numBondsBio.MMTF.Type, Bio.MMTF
numChainsBio.MMTF.Type, Bio.MMTF
numGroupsBio.MMTF.Type, Bio.MMTF
NUMMDLBio.PDB.Type
numModelsBio.MMTF.Type, Bio.MMTF
OBSLTEBio.PDB.Type
OC 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
ocBio.Uniprot.Type, Bio.Uniprot
occupancyBio.Structure
occupancyListBio.MMTF.Type, Bio.MMTF
officialNameBio.Uniprot.Type, Bio.Uniprot
OGBio.Uniprot.Type, Bio.Uniprot
ogBio.Uniprot.Type, Bio.Uniprot
OH 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
ohBio.Uniprot.Type, Bio.Uniprot
optionalBio.Uniprot.Parser
optionalInfoBio.Uniprot.Type, Bio.Uniprot
orderedLocusNamesBio.Uniprot.Type, Bio.Uniprot
orfNamesBio.Uniprot.Type, Bio.Uniprot
Organism 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
organismBio.GB.Type, Bio.GB
ORIGX1Bio.PDB.Type
ORIGX2Bio.PDB.Type
ORIGX3Bio.PDB.Type
OS 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
osBio.Uniprot.Type, Bio.Uniprot
OtherBio.Uniprot.Type, Bio.Uniprot
otherFieldsBio.PDB.Type
OX 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
oxBio.Uniprot.Type, Bio.Uniprot
parseACBio.Uniprot.Parser
parseBinaryBio.MMTF.Decode.Codec
parseBreakBio.Uniprot.Parser
parseCCBio.Uniprot.Parser
parseDEBio.Uniprot.Parser
parseDefItemBio.Uniprot.Parser
parseDRBio.Uniprot.Parser
parseDTBio.Uniprot.Parser
parseEndBio.Uniprot.Parser
parseEvidenceBio.Uniprot.Parser
parseFTBio.Uniprot.Parser
parseGNBio.Uniprot.Parser
parseIDBio.Uniprot.Parser
parseKWBio.Uniprot.Parser
parseMultiLineBio.Uniprot.Parser
parseMultiLineCommentBio.Uniprot.Parser
parseNodesBio.Uniprot.Parser
parseOCBio.Uniprot.Parser
parseOGBio.Uniprot.Parser
parseOHBio.Uniprot.Parser
parseOSBio.Uniprot.Parser
parseOXBio.Uniprot.Parser
parsePEBio.Uniprot.Parser
parseRecordBio.Uniprot.Parser, Bio.Uniprot
parseRefBio.Uniprot.Parser
parseSQBio.Uniprot.Parser
parseTillCharBio.Uniprot.Parser
parseTillEndBio.Uniprot.Parser
PDB 
1 (Type/Class)Bio.PDB.Type
2 (Data Constructor)Bio.PDB.Type
pdbPBio.PDB.Parser
PDBWarningsBio.PDB.Reader
PEBio.Uniprot.Type, Bio.Uniprot
peBio.Uniprot.Type, Bio.Uniprot
PiHelixBio.Structure
PLASMIDBio.Uniprot.Type, Bio.Uniprot
PlasmidBio.Uniprot.Type, Bio.Uniprot
Plastid 
1 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
2 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
PlastidApicoplastBio.Uniprot.Type, Bio.Uniprot
PlastidChloroplastBio.Uniprot.Type, Bio.Uniprot
PlastidCyanelleBio.Uniprot.Type, Bio.Uniprot
PlastidNonPhotosyntheticBio.Uniprot.Type, Bio.Uniprot
PlastidOrganellarChromatophoreBio.Uniprot.Type, Bio.Uniprot
PlastidSimpleBio.Uniprot.Type, Bio.Uniprot
PrecursorBio.Uniprot.Type, Bio.Uniprot
PredictedBio.Uniprot.Type, Bio.Uniprot
PubMedBio.Uniprot.Type, Bio.Uniprot
pubmedBio.GB.Type, Bio.GB
raBio.Uniprot.Type, Bio.Uniprot
RangeBio.Sequence.Utilities, Bio.Sequence.Class, Bio.Sequence
rcBio.Uniprot.Type, Bio.Uniprot
RealMaeValueBio.MAE.Type, Bio.MAE
recIndexDecBio.MMTF.Decode.Codec
RecNameBio.Uniprot.Parser
recNameBio.Uniprot.Type, Bio.Uniprot
Record 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
Reference 
1 (Type/Class)Bio.GB.Type, Bio.GB
2 (Data Constructor)Bio.GB.Type, Bio.GB
3 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
4 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
referencesBio.GB.Type, Bio.GB
referenceTBio.GB.Type, Bio.GB
refsBio.Uniprot.Type, Bio.Uniprot
releaseDateBio.MMTF.Type, Bio.MMTF
RemarkCodeBio.PDB.Type
RemarkDataBio.PDB.Type
remarksBio.PDB.Type
resAtomsBio.Structure
resBondsBio.Structure
resChemCompTypeBio.Structure
Residue 
1 (Type/Class)Bio.Structure
2 (Data Constructor)Bio.Structure
residueBio.Structure.Functions
residueIDBio.PDB.BondRestoring
residuesBio.Structure
resInsertionCodeBio.Structure
resNameBio.Structure
resNumberBio.Structure
resolutionBio.MMTF.Type, Bio.MMTF
resourceAbbrBio.Uniprot.Type, Bio.Uniprot
resourceIdBio.Uniprot.Type, Bio.Uniprot
resSecondaryBio.Structure
restoreChainLocalBondsBio.PDB.BondRestoring
restoreModelGlobalBondsBio.PDB.BondRestoring
restoreModelLocalBondsBio.PDB.BondRestoring
REVDATBio.PDB.Type
reverseBio.Sequence.Functions.Sequence, Bio.Sequence
ReviewedBio.Uniprot.Type, Bio.Uniprot
rFreeBio.MMTF.Type, Bio.MMTF
rgBio.Uniprot.Type, Bio.Uniprot
rlBio.Uniprot.Type, Bio.Uniprot
RN 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
rnBio.Uniprot.Type, Bio.Uniprot
rpBio.Uniprot.Type, Bio.Uniprot
rtBio.Uniprot.Type, Bio.Uniprot
runLengthDecBio.MMTF.Decode.Codec
rWorkBio.MMTF.Type, Bio.MMTF
rxBio.Uniprot.Type, Bio.Uniprot
SCALE1Bio.PDB.Type
SCALE2Bio.PDB.Type
SCALE3Bio.PDB.Type
SecondaryStructureBio.Structure
secStructListBio.MMTF.Type, Bio.MMTF
SEQADVBio.PDB.Type
seqLengthBio.Uniprot.Type, Bio.Uniprot
SEQRESBio.PDB.Type
sequ 
1 (Function)Bio.Sequence.Class, Bio.Sequence
2 (Function)Bio.FASTA.Type, Bio.FASTA
3 (Function)Bio.Uniprot.Type, Bio.Uniprot
SequenceBio.Sequence.Class, Bio.Sequence
SequenceDecodableBio.Sequence.Class, Bio.Sequence
sequenceDecodeBio.Sequence.Class, Bio.Sequence
sequenceIndexListBio.MMTF.Type, Bio.MMTF
seqVersionBio.Uniprot.Type, Bio.Uniprot
seqVersionDateBio.Uniprot.Type, Bio.Uniprot
serializeModelsBio.Structure
SHEETBio.PDB.Type
shortNameBio.Uniprot.Type, Bio.Uniprot
SimpleBio.Uniprot.Type, Bio.Uniprot
SITEBio.PDB.Type
SOURCEBio.PDB.Type
Source 
1 (Type/Class)Bio.GB.Type, Bio.GB
2 (Data Constructor)Bio.GB.Type, Bio.GB
sourceBio.GB.Type, Bio.GB
sourceTBio.GB.Type, Bio.GB
spaceGroupBio.MMTF.Type, Bio.MMTF
specieBio.Uniprot.Type, Bio.Uniprot
SPLITBio.PDB.Type
SPRSDEBio.PDB.Type
SQ 
1 (Type/Class)Bio.Uniprot.Type, Bio.Uniprot
2 (Data Constructor)Bio.Uniprot.Type, Bio.Uniprot
sqBio.Uniprot.Type, Bio.Uniprot
SSBONDBio.PDB.Type
ssDecBio.MMTF.Decode.Codec
StatusBio.Uniprot.Type, Bio.Uniprot
statusBio.Uniprot.Type, Bio.Uniprot
STRAINBio.Uniprot.Type, Bio.Uniprot
StringMaeValueBio.MAE.Type, Bio.MAE
structureBio.MMTF.Type, Bio.MMTF
StructureData 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
structureDataBio.MMTF.Decode
structureIdBio.MMTF.Type, Bio.MMTF
StructureModelsBio.Structure
StructureSerializableBio.Structure
SubNameBio.Uniprot.Parser
subNamesBio.Uniprot.Type, Bio.Uniprot
synonymBio.Uniprot.Type, Bio.Uniprot
synonymsBio.Uniprot.Type, Bio.Uniprot
Table 
1 (Type/Class)Bio.MAE.Type, Bio.MAE
2 (Data Constructor)Bio.MAE.Type, Bio.MAE
tableNameBio.MAE.Type, Bio.MAE
tablePBio.MAE.Parser
tablesBio.MAE.Type, Bio.MAE
tailBio.Sequence.Functions.Sequence, Bio.Sequence
takeBio.Sequence.Functions.Sequence, Bio.Sequence
taxIdBio.Uniprot.Type, Bio.Uniprot
taxonomicCodeBio.Uniprot.Type, Bio.Uniprot
ThreeTenHelixBio.Structure
Thresholds 
1 (Type/Class)Bio.ABI.Clean, Bio.ABI
2 (Data Constructor)Bio.ABI.Clean, Bio.ABI
TISSUEBio.Uniprot.Type, Bio.Uniprot
title 
1 (Function)Bio.PDB.Type
2 (Function)Bio.GB.Type, Bio.GB
3 (Function)Bio.MMTF.Type, Bio.MMTF
toDoubleBio.Sequence.Class, Bio.Sequence
toEPBio.Uniprot.Type, Bio.Uniprot
toFile 
1 (Function)Bio.GB
2 (Function)Bio.FASTA
TokenBio.Uniprot.Type, Bio.Uniprot
toListBio.Sequence.Functions.Sequence, Bio.Sequence
toMarkedBio.Sequence.Functions.Marking, Bio.Sequence
TopicBio.Uniprot.Type, Bio.Uniprot
topicBio.Uniprot.Type, Bio.Uniprot
toSequenceBio.Sequence.Class, Bio.Sequence
toTextBio.GB
toWeightedBio.Sequence.Functions.Weight, Bio.Sequence
Transform 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
transformBio.MMTF.Decode
transformListBio.MMTF.Type, Bio.MMTF
transformObjectMapBio.MMTF.Decode.MessagePack
TRANSPOSONBio.Uniprot.Type, Bio.Uniprot
TurnBio.Structure
ucABio.MMTF.Type, Bio.MMTF
ucAlphaBio.MMTF.Type, Bio.MMTF
ucBBio.MMTF.Type, Bio.MMTF
ucBetaBio.MMTF.Type, Bio.MMTF
ucCBio.MMTF.Type, Bio.MMTF
ucDecBio.MMTF.Decode.Codec
ucGammaBio.MMTF.Type, Bio.MMTF
UncertainBio.Uniprot.Type, Bio.Uniprot
UncertainEPBio.Uniprot.Type, Bio.Uniprot
UndefinedBio.Structure
UnitCell 
1 (Type/Class)Bio.MMTF.Type, Bio.MMTF
2 (Data Constructor)Bio.MMTF.Type, Bio.MMTF
unitCellBio.MMTF.Type, Bio.MMTF
UnknownEPBio.Uniprot.Type, Bio.Uniprot
UnreviewedBio.Uniprot.Type, Bio.Uniprot
unsafeAddMarkingsBio.Sequence.Functions.Marking, Bio.Sequence
unsafeCreateSequenceBio.Sequence.Class, Bio.Sequence
unsafeEitherBio.Sequence.Utilities
unsafeFromMaeValueBio.MAE.Type, Bio.MAE
unsafeGetMarkingBio.Sequence.Functions.Marking, Bio.Sequence
unsafeGetRangeBio.Sequence.Functions.Sequence, Bio.Sequence
unsafeGetWeightBio.Sequence.Functions.Weight, Bio.Sequence
unsafeMarkedSequenceBio.Sequence.Class, Bio.Sequence
unsafeToMarkedBio.Sequence.Functions.Marking, Bio.Sequence
unsafeToWeightedBio.Sequence.Functions.Weight, Bio.Sequence
unsafeWeightedSequenceBio.Sequence.Class, Bio.Sequence
Version 
1 (Type/Class)Bio.GB.Type, Bio.GB
2 (Data Constructor)Bio.GB.Type, Bio.GB
version 
1 (Function)Bio.MAE.Type, Bio.MAE
2 (Function)Bio.GB.Type, Bio.GB
versionPBio.MAE.Parser
versionTBio.GB.Type, Bio.GB
VirusBio.Uniprot.Type, Bio.Uniprot
WeightBio.Sequence.Class, Bio.Sequence
WeightedSequenceBio.Sequence.Class, Bio.Sequence
weightedSequenceBio.Sequence.Class, Bio.Sequence
weightsBio.Sequence.Class, Bio.Sequence
xCoordListBio.MMTF.Type, Bio.MMTF
yCoordListBio.MMTF.Type, Bio.MMTF
zCoordListBio.MMTF.Type, Bio.MMTF
_sequenceInnerBio.Sequence.Class