cabal-version: 1.12 -- This file has been generated from package.yaml by hpack version 0.34.6. -- -- see: https://github.com/sol/hpack name: cobot-io version: 0.1.4.4 synopsis: Biological data file formats and IO description: Please see the README on GitHub at category: Bio homepage: https://github.com/biocad/cobot-io#readme bug-reports: https://github.com/biocad/cobot-io/issues author: Pavel Yakovlev, Bogdan Neterebskii, Alexander Sadovnikov maintainer: pavel@yakovlev.me copyright: 2020, Biocad license: BSD3 license-file: LICENSE build-type: Simple tested-with: GHC ==8.10.7 || ==9.0.2 || ==9.2.2 extra-source-files: README.md ChangeLog.md test/GB/fromYanaWithLove.gb test/GB/pAAV-GFP-CellBioLab-dots.gb test/GB/pAAV-GFP-CellBioLab.gb test/GB/pAAV_CMV_RPE65_PolyA_linkers.gb test/GB/pIntA-TRBV.gb test/FASTA/correct.fasta test/MAE/Capri.mae test/MAE/docking_1.mae test/MAE/docking_1_2.mae test/MAE/docking_2.mae test/MAE/GLY_3.mae test/MAE/h2o.mae test/MAE/schrod_test.mae test/MAE/small.mae test/PDB/1PPE_I.mae test/PDB/BondsRestoring/1vfb_ab_b.mae test/PDB/BondsRestoring/3mxw_ab_b.mae test/PDB/BondsRestoring/4dn4_ag_b.mae test/PDB/BondsRestoring/ALA_3.mae test/PDB/BondsRestoring/ARG_3.mae test/PDB/BondsRestoring/ASN_3.mae test/PDB/BondsRestoring/ASP_3.mae test/PDB/BondsRestoring/CYS_3.mae test/PDB/BondsRestoring/GLN_3.mae test/PDB/BondsRestoring/GLU_3.mae test/PDB/BondsRestoring/GLY_3.mae test/PDB/BondsRestoring/HID_3.mae test/PDB/BondsRestoring/HIE_3.mae test/PDB/BondsRestoring/HIP_3.mae test/PDB/BondsRestoring/ILE_3.mae test/PDB/BondsRestoring/LEU_3.mae test/PDB/BondsRestoring/LYS_3.mae test/PDB/BondsRestoring/MET_3.mae test/PDB/BondsRestoring/PHE_3.mae test/PDB/BondsRestoring/PRO_3.mae test/PDB/BondsRestoring/SER_3.mae test/PDB/BondsRestoring/THR_3.mae test/PDB/BondsRestoring/TRP_3.mae test/PDB/BondsRestoring/TYR_3.mae test/PDB/BondsRestoring/VAL_3.mae test/PDB/1igt.pdb test/PDB/1PPE_I.pdb test/PDB/6a0z.HLHL.pdb test/PDB/BondsRestoring/1vfb_ab_b.pdb test/PDB/BondsRestoring/3mxw_ab_b.pdb test/PDB/BondsRestoring/4dn4_ag_b.pdb test/PDB/BondsRestoring/ALA_3.pdb test/PDB/BondsRestoring/ARG_3.pdb test/PDB/BondsRestoring/ASN_3.pdb test/PDB/BondsRestoring/ASP_3.pdb test/PDB/BondsRestoring/CYS_3.pdb test/PDB/BondsRestoring/GLN_3.pdb test/PDB/BondsRestoring/GLU_3.pdb test/PDB/BondsRestoring/GLY_3.pdb test/PDB/BondsRestoring/HID_3.pdb test/PDB/BondsRestoring/HIE_3.pdb test/PDB/BondsRestoring/HIP_3.pdb test/PDB/BondsRestoring/ILE_3.pdb test/PDB/BondsRestoring/LEU_3.pdb test/PDB/BondsRestoring/LYS_3.pdb test/PDB/BondsRestoring/MET_3.pdb test/PDB/BondsRestoring/PHE_3.pdb test/PDB/BondsRestoring/PRO_3.pdb test/PDB/BondsRestoring/SER_3.pdb test/PDB/BondsRestoring/THR_3.pdb test/PDB/BondsRestoring/TRP_3.pdb test/PDB/BondsRestoring/TYR_3.pdb test/PDB/BondsRestoring/VAL_3.pdb test/PDB/Writer/big_file.pdb test/PDB/Writer/hetatms.pdb test/PDB/Writer/several_models.pdb test/ABI/bad.ab1 test/ABI/bad_at_the_end.ab1 test/ABI/bad_quality.ab1 test/ABI/test.ab1 test/ABI/not_ab1.txt test/MMTF/1FSD.dms source-repository head type: git location: https://github.com/biocad/cobot-io library exposed-modules: Bio.ABI Bio.ABI.Clean Bio.ABI.Decode Bio.FASTA Bio.FASTA.Parser Bio.FASTA.Type Bio.FASTA.Writer Bio.GB Bio.GB.Parser Bio.GB.Type Bio.GB.Writer Bio.MAE Bio.MAE.Parser Bio.MAE.Type Bio.MMTF Bio.MMTF.Decode Bio.MMTF.Decode.Codec Bio.MMTF.Decode.MessagePack Bio.MMTF.MessagePack Bio.MMTF.Type Bio.PDB Bio.PDB.BondRestoring Bio.PDB.Functions Bio.PDB.Parser Bio.PDB.Reader Bio.PDB.Type Bio.PDB.Writer Bio.Sequence Bio.Sequence.Basecalled Bio.Sequence.Basecalled.Type Bio.Sequence.Class Bio.Sequence.Functions.Marking Bio.Sequence.Functions.Sequence Bio.Sequence.Functions.Weight Bio.Sequence.Range Bio.Sequence.Utilities Bio.Structure Bio.Structure.Functions Bio.Uniprot Bio.Uniprot.Parser Bio.Uniprot.Type Bio.Utils.Map Bio.Utils.Vector other-modules: Paths_cobot_io hs-source-dirs: src default-extensions: DeriveGeneric DeriveFunctor DeriveFoldable DeriveAnyClass FlexibleInstances InstanceSigs MultiParamTypeClasses RecordWildCards ScopedTypeVariables OverloadedStrings TypeApplications TypeFamilies DataKinds ConstraintKinds TypeOperators TemplateHaskell FlexibleContexts build-depends: array ==0.5.* , attoparsec >=0.10 && <0.15 , base >=4.14 && <5 , binary >=0.8.3.0 && <1.0 , bytestring >=0.10.8.1 && <0.12 , cobot >=0.1.1.7 , containers >=0.5.7.1 && <0.7 , data-msgpack >=0.0.9 && <0.1 , deepseq ==1.4.* , http-conduit ==2.3.* , hyraxAbif >=0.2.3.27 && <0.2.4.0 , lens >=4.16 && <5.2 , linear >=1.20 && <1.22 , megaparsec >=9.0.1 , mtl >=2.2.1 && <2.3.0 , parser-combinators >=1.2.1 , split , text >=1.2.2.1 && <2.1 , vector if impl(ghc >= 9.0) ghc-options: -haddock -Winvalid-haddock default-language: Haskell2010 test-suite cobot-io-test type: exitcode-stdio-1.0 main-is: Spec.hs other-modules: ABISpec FastaParserSpec FASTASpec FastaWriterSpec GBParserSpec GBWriterSpec MAEParserSpec MAESpec MMTFSpec PDBParserSpec PDBSpec PDBWriterSpec RangeSpec SequenceSpec StructureSpec UniprotSpec Paths_cobot_io hs-source-dirs: test default-extensions: OverloadedStrings TypeFamilies ghc-options: -threaded -rtsopts -with-rtsopts=-N build-depends: QuickCheck >=2.9.2 && <2.15 , array ==0.5.* , attoparsec >=0.10 && <0.15 , base >=4.14 && <5 , binary >=0.8.3.0 && <1.0 , bytestring >=0.10.8.1 && <0.12 , cobot >=0.1.1.7 , cobot-io , containers >=0.5.7.1 && <0.7 , data-msgpack >=0.0.9 && <0.1 , deepseq ==1.4.* , directory , hspec >=2.4.1 && <2.11 , http-conduit ==2.3.* , hyraxAbif >=0.2.3.27 && <0.2.4.0 , lens >=4.16 && <5.2 , linear , megaparsec >=9.0.1 , mtl >=2.2.1 && <2.3.0 , neat-interpolation >=0.3 , parser-combinators >=1.2.1 , split , text >=1.2.2.1 && <2.1 , vector default-language: Haskell2010