cabal-version: 1.12

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-- see: https://github.com/sol/hpack
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name:           cobot-tools
version:        0.1.2.1
synopsis:       Biological data file formats and IO
description:    Please see the README on GitHub at <https://github.com/less-wrong/cobot-tools#readme>
category:       Bio
homepage:       https://github.com/less-wrong/cobot-tools#readme
bug-reports:    https://github.com/less-wrong/cobot-tools/issues
author:         Pavel Yakovlev, Bogdan Neterebskii, Alexander Sadovnikov
maintainer:     pavel@yakovlev.me
copyright:      2018-2019, Less Wrong Bio
license:        BSD3
license-file:   LICENSE
build-type:     Simple
extra-source-files:
    README.md
    ChangeLog.md

source-repository head
  type: git
  location: https://github.com/less-wrong/cobot-tools

library
  exposed-modules:
      Bio.Tools.Sequence.CodonOptimization.Algo
      Bio.Tools.Sequence.CodonOptimization.Constants
      Bio.Tools.Sequence.CodonOptimization.Types
      Bio.Tools.Sequence.Primers.Constants
      Bio.Tools.Sequence.Primers.Optimization
      Bio.Tools.Sequence.Primers.Properties
      Bio.Tools.Sequence.Primers.Types
      Bio.Tools.Sequence.ViennaRNA.Cofold
      Bio.Tools.Sequence.ViennaRNA.Fold
      Bio.Tools.Sequence.ViennaRNA.Internal.Cofold
      Bio.Tools.Sequence.ViennaRNA.Internal.Fold
      Bio.Tools.Sequence.ViennaRNA.Internal.RNALike
  other-modules:
      Paths_cobot_tools
  hs-source-dirs:
      src
  default-extensions: DeriveGeneric DeriveFunctor DeriveFoldable DeriveAnyClass FlexibleInstances InstanceSigs MultiParamTypeClasses RecordWildCards ScopedTypeVariables OverloadedStrings TypeFamilies DataKinds ConstraintKinds TypeOperators TemplateHaskell FlexibleContexts
  c-sources:
      src/Bio/Tools/Sequence/ViennaRNA/Native/vienna_rna_wrapper.c
  extra-libraries:
      RNA
  build-depends:
      array >=0.5 && <0.6
    , base >=4.7 && <5
    , bytestring
    , cobot
    , containers >=0.5.7.1 && <0.7
    , data-default
    , data-msgpack >=0.0.9 && <0.1
    , deepseq >=1.4 && <1.5
    , lens >=4.16 && <5.0
    , mtl >=2.2.1 && <2.3.0
    , regex-tdfa
    , text
  default-language: Haskell2010

test-suite cobot-tools-test
  type: exitcode-stdio-1.0
  main-is: Spec.hs
  other-modules:
      SpecCodonOptimization
      SpecPrimers
      SpecViennaRNA
      Paths_cobot_tools
  hs-source-dirs:
      test
  default-extensions: OverloadedStrings TypeFamilies
  ghc-options: -threaded -rtsopts -with-rtsopts=-N
  build-depends:
      QuickCheck >=2.9.2 && <2.13
    , array >=0.5 && <0.6
    , base >=4.7 && <5
    , bytestring
    , cobot
    , cobot-tools
    , containers >=0.5.7.1 && <0.7
    , data-default
    , data-msgpack >=0.0.9 && <0.1
    , deepseq >=1.4 && <1.5
    , hspec >=2.4.1 && <2.7
    , lens >=4.16 && <5.0
    , mtl >=2.2.1 && <2.3.0
    , neat-interpolation >=0.3
    , random
    , regex-tdfa
    , text
  default-language: Haskell2010