diversity: Return the diversity at each position for all sequences in a fasta file

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.

Versions [faq],,,,,,,,,,,,,,,,,,,,,,,,, (info)
Dependencies base (>=4.6 && <4.8), containers (==0.5.*), diversity, fasta (>= && <0.6), math-functions (==0.1.*), optparse-applicative (>=0.10 && <0.12), parsec (>=3.1 && <4.0), split (==0.2.*) [details]
License GPL-2.0-only
Author Gregory W. Schwartz
Maintainer gregory.schwartz@drexel.edu
Category Bioinformatics
Home page https://github.com/GregorySchwartz/diversity
Uploaded by GregorySchwartz at Tue Mar 3 19:26:43 UTC 2015
Distributions NixOS:
Executables diversity
Downloads 9729 total (222 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2015-03-03 [all 1 reports]




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