Math.Diversity.Diversity

Collection of functions pertaining to finding the diversity of samples.

Documentation

hamming :: String -> String -> Int

Takes two strings, returns Hamming distance

diversity :: Ord b => Double -> [b] -> Double

Returns the diversity of a list of things

rarefactionCurve :: (Eq a, Ord a) => Bool -> Int -> Integer -> Integer -> [a] -> IO [(Int, (Double, Double))]

Returns the rarefaction curve for each position in a list

rarefactionSampleCurve :: (Ord a, Ord b) => Bool -> Int -> Int -> [(a, b)] -> IO [(Int, (Double, Double))]

Returns the rarefaction curve for each position in a list

rarefactionViable :: [Double] -> Double

Calculates the percent of the curve that is above 95% of height of the curve