-- Initial diversity.cabal generated by cabal init.  For further 
-- documentation, see http://haskell.org/cabal/users-guide/

name:                diversity
version:             0.6.3.0
synopsis:            Return the diversity at each position for all sequences in a fasta file
description:         Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.
homepage:            https://github.com/GregorySchwartz/diversity
license:             GPL-2
license-file:        LICENSE
author:              Gregory W. Schwartz
maintainer:          gregory.schwartz@drexel.edu
-- copyright:           
category:            Bioinformatics
build-type:          Simple
cabal-version:       >=1.8

library
  -- ghc-options: -O2
  hs-source-dirs:      src/src-lib
  exposed-modules:     Math.Diversity.Types, Math.Diversity.Diversity, Math.Diversity.GenerateDiversity, Math.Diversity.Print, Math.Diversity.Statistics, Math.Diversity.RandomSampling
  -- other-modules:
  build-depends:       base >=4.6 && <4.9, containers >=0.5 && <0.6, split >=0.2 && <0.3, parsec >=3.1 && <4.0, fasta >=0.7 && <0.8, math-functions >=0.1 && <0.2, scientific >= 0.3 && < 0.4, random-shuffle >=0.0 && < 0.1, MonadRandom >=0.3 && <0.4, data-ordlist >= 0.4 && < 0.5

executable diversity
  ghc-options: -O2
  -- Directories containing source files.
  hs-source-dirs:      src/src-exec
  main-is:             Main.hs
  -- other-modules:       
  build-depends:       diversity, base >=4.6 && <4.9, optparse-applicative >=0.10 && <0.12, fasta >=0.7 && <0.8, pipes >= 4.1 && < 4.2, containers >=0.5 && <0.6