diversity: Return the diversity at each position by default for all sequences in a fasta file

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find the diversity of a collection of entities, mainly for use with fasta sequences.

Versions [faq] 0.2.0.5, 0.3.0.0, 0.3.4.0, 0.3.4.1, 0.3.5.0, 0.3.5.1, 0.4.0.0, 0.4.0.1, 0.4.0.2, 0.5.0.0, 0.5.0.2, 0.6.0.0, 0.6.0.1, 0.6.0.2, 0.6.2.0, 0.6.2.1, 0.6.3.0, 0.7.0.0, 0.7.0.1, 0.7.0.3, 0.7.1.0, 0.7.1.1, 0.8.0.0, 0.8.0.1, 0.8.0.2, 0.8.1.0 (info)
Dependencies base (>=4.6 && <5), containers (>=0.5), data-ordlist (>=0.4), diversity, fasta (>=0.8), math-functions (>=0.1), MonadRandom (>=0.3), optparse-applicative (>=0.10), parsec (>=3.1), pipes (>=4.1), random-shuffle, scientific (>=0.3), split (>=0.2) [details]
License GPL-2.0-only
Author Gregory W. Schwartz
Maintainer gregory.schwartz@drexel.edu
Category Bioinformatics
Home page https://github.com/GregorySchwartz/diversity
Uploaded by GregorySchwartz at Fri Nov 20 15:14:11 UTC 2015
Distributions NixOS:0.8.1.0
Executables diversity
Downloads 9980 total (423 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2016-11-30 [all 4 reports]

Modules

  • Math
    • Diversity
      • Math.Diversity.Diversity
      • Math.Diversity.GenerateDiversity
      • Math.Diversity.Print
      • Math.Diversity.RandomSampling
      • Math.Diversity.Statistics
      • Math.Diversity.Types

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