-- Initial diversity.cabal generated by cabal init.  For further 
-- documentation, see http://haskell.org/cabal/users-guide/

name:                diversity
version:             0.7.1.1
synopsis:            Return the diversity at each position by default for all sequences in a fasta file
description:         Find the diversity of a collection of entities, mainly for use with fasta sequences.
homepage:            https://github.com/GregorySchwartz/diversity
license:             GPL-2
license-file:        LICENSE
author:              Gregory W. Schwartz
maintainer:          gregory.schwartz@drexel.edu
-- copyright:           
category:            Bioinformatics
build-type:          Simple
cabal-version:       >=1.8

library
  -- ghc-options: -O2
  hs-source-dirs:      src/src-lib
  exposed-modules:     Math.Diversity.Types
                     , Math.Diversity.Diversity
                     , Math.Diversity.GenerateDiversity
                     , Math.Diversity.Print
                     , Math.Diversity.Statistics
                     , Math.Diversity.RandomSampling
  -- other-modules:
  build-depends:       base >=4.6 && <5
                     , containers >=0.5
                     , split >=0.2
                     , parsec >=3.1
                     , fasta >=0.8
                     , math-functions >=0.1
                     , scientific >= 0.3
                     , random-shuffle
                     , MonadRandom >=0.3
                     , data-ordlist >= 0.4

executable diversity
  ghc-options: -O2
  -- Directories containing source files.
  hs-source-dirs:      src/src-exec
  main-is:             Main.hs
  -- other-modules:
  build-depends:       diversity
                     , base >=4.6 && <5
                     , optparse-applicative >=0.10
                     , fasta >=0.8
                     , pipes >= 4.1
                     , containers >=0.5