| Copyright | 2021 Dominik Schrempf |
|---|---|
| License | GPL-3.0-or-later |
| Maintainer | dominik.schrempf@gmail.com |
| Stability | unstable |
| Portability | portable |
| Safe Haskell | Safe-Inferred |
| Language | Haskell2010 |
ELynx.MarkovProcess.Nucleotide
Description
Creation date: Thu Jan 24 08:33:26 2019.
XXX: Maybe rename to something like DNA substitution models. Nucleotide ~ Alphabet; DNA ~ Character.
The order of nucleotides is A, C, G, T; see Nucleotide.
For the different DNA substitution models, please see https://en.wikipedia.org/wiki/Models_of_DNA_evolution
Synopsis
- jc :: Normalize -> SubstitutionModel
- f81 :: Normalize -> StationaryDistribution -> SubstitutionModel
- hky :: Normalize -> Double -> StationaryDistribution -> SubstitutionModel
- gtr4 :: Normalize -> [Double] -> StationaryDistribution -> SubstitutionModel
Documentation
jc :: Normalize -> SubstitutionModel Source #
JC substitution model.
f81 :: Normalize -> StationaryDistribution -> SubstitutionModel Source #
F81 substitution model.
hky :: Normalize -> Double -> StationaryDistribution -> SubstitutionModel Source #
HKY substitution model.
gtr4 :: Normalize -> [Double] -> StationaryDistribution -> SubstitutionModel Source #
HKY substitution model.