cabal-version:      3.0
name:               elynx-seq
version:            0.7.2.0
synopsis:           Handle molecular sequences
description:
  Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on GitHub at <https://github.com/dschrempf/elynx>.

category:           Bioinformatics
homepage:           https://github.com/dschrempf/elynx#readme
bug-reports:        https://github.com/dschrempf/elynx/issues
author:             Dominik Schrempf
maintainer:         dominik.schrempf@gmail.com
copyright:          2021 Dominik Schrempf
license:            GPL-3.0-or-later
license-file:       LICENSE
build-type:         Simple
extra-source-files:
  ChangeLog.md
  data/AminoAcid.fasta
  data/Erroneous.fasta
  data/Nucleotide.fasta
  data/NucleotideDifferentLength.fasta
  data/NucleotideDifferentLengthTrimmed.fasta
  data/NucleotideIUPAC.fasta
  data/TranslateMitochondrialVertebrateDNA.fasta
  data/TranslateMitochondrialVertebrateProtein.fasta
  README.md

source-repository head
  type:     git
  location: https://github.com/dschrempf/elynx

library
  exposed-modules:
    ELynx.Alphabet.Alphabet
    ELynx.Alphabet.Character
    ELynx.Alphabet.DistributionDiversity
    ELynx.Character.AminoAcid
    ELynx.Character.AminoAcidI
    ELynx.Character.AminoAcidS
    ELynx.Character.AminoAcidX
    ELynx.Character.Character
    ELynx.Character.Codon
    ELynx.Character.Nucleotide
    ELynx.Character.NucleotideI
    ELynx.Character.NucleotideX
    ELynx.Sequence.Alignment
    ELynx.Sequence.Defaults
    ELynx.Sequence.Distance
    ELynx.Sequence.Divergence
    ELynx.Sequence.Export.Fasta
    ELynx.Sequence.Import.Fasta
    ELynx.Sequence.Sequence
    ELynx.Sequence.Translate

  other-modules:    Paths_elynx_seq
  autogen-modules:  Paths_elynx_seq
  hs-source-dirs:   src
  ghc-options:      -Wall -Wunused-packages
  build-depends:
    , aeson
    , attoparsec
    , base             >=4.7 && <5
    , bytestring
    , containers
    , matrices
    , parallel
    , primitive
    , random
    , vector
    , vector-th-unbox
    , word8

  default-language: Haskell2010

test-suite seq-test
  type:             exitcode-stdio-1.0
  main-is:          Spec.hs
  other-modules:
    ELynx.Alphabet.DistributionDiversitySpec
    ELynx.Sequence.AlignmentSpec
    ELynx.Sequence.Export.FastaSpec
    ELynx.Sequence.Import.FastaSpec
    ELynx.Sequence.SequenceSpec
    ELynx.Sequence.TranslateSpec
    Paths_elynx_seq

  autogen-modules:  Paths_elynx_seq
  hs-source-dirs:   test
  ghc-options:      -Wall -Wunused-packages
  build-depends:
    , base         >=4.7 && <5
    , bytestring
    , elynx-seq
    , elynx-tools
    , hspec
    , matrices
    , vector

  default-language: Haskell2010