epi-sim-0.7.0: A library for simulating epidemics as birth-death processes.

Index

AbsoluteTime 
1 (Type/Class)Epidemic.Types.Time
2 (Data Constructor)Epidemic.Types.Time
absTimeEpidemic.Types.Time
addPersonEpidemic.Types.Population
aggregatedEpidemic.Types.Observations
allEventsEpidemic
allTimesEpidemic.Types.Time
allValuesEpidemic.Types.Time
ampersandBuilderEpidemic.Types.Newick
asConsecutiveIntervals1Epidemic.Types.Time
asNewickStringEpidemic.Types.Newick
asPeopleEpidemic.Types.Population
asTimedEpidemic.Types.Time
BDSCODParameters 
1 (Type/Class)Epidemic.Model.BDSCOD
2 (Data Constructor)Epidemic.Model.BDSCOD
BDSCODPopulation 
1 (Type/Class)Epidemic.Model.BDSCOD
2 (Data Constructor)Epidemic.Model.BDSCOD
birthProbEpidemic.Types.Parameter
BranchEpidemic.Types.Events
cadlagValueEpidemic.Types.Time
catastrophePeopleBuilderEpidemic.Types.Newick
colonBuilderEpidemic.Types.Newick
commaBuilderEpidemic.Types.Newick
configuration 
1 (Function)Epidemic.Model.LogisticBDSD
2 (Function)Epidemic.Model.InhomogeneousBDSCOD
3 (Function)Epidemic.Model.InhomogeneousBDS
4 (Function)Epidemic.Model.BDSCOD
derivedFromEpidemic.Types.Events
diracDeltaValueEpidemic.Types.Time
EpidemicEventEpidemic.Types.Events
EpidemicTreeEpidemic.Types.Events
eventPopDeltaEpidemic
eventRateEpidemic.Types.Parameter
eventWeightsEpidemic.Types.Parameter
ExtinctionEpidemic.Types.Events
firstScheduledEpidemic
genIOFromFixedEpidemic.Types.Simulation
genIOFromSystemEpidemic.Types.Simulation
genIOFromWord32Epidemic.Types.Simulation
getNumRemovedByCatastropheEpidemic.Model.InhomogeneousBDSCOD
getNumRemovedByDeathEpidemic.Model.InhomogeneousBDSCOD
getNumRemovedByDisasterEpidemic.Model.InhomogeneousBDSCOD
getNumRemovedByOccurrenceEpidemic.Model.InhomogeneousBDSCOD
getNumRemovedBySamplingEpidemic.Model.InhomogeneousBDSCOD
hasTimeEpidemic.Types.Time
haveCommonPeopleEpidemic.Types.Population
Identifier 
1 (Type/Class)Epidemic.Types.Population
2 (Data Constructor)Epidemic.Types.Population
includesPersonEpidemic.Types.Population
IndividualSampleEpidemic.Types.Events
indSampPersonEpidemic.Types.Events
indSampSeqEpidemic.Types.Events
indSampTimeEpidemic.Types.Events
infectedEpidemic
infectedByEpidemic
InfectionEpidemic.Types.Events
infectiousPeopleEpidemic.Types.Population
InhomBDSCODPop 
1 (Type/Class)Epidemic.Model.InhomogeneousBDSCOD
2 (Data Constructor)Epidemic.Model.InhomogeneousBDSCOD
InhomBDSCODRates 
1 (Type/Class)Epidemic.Model.InhomogeneousBDSCOD
2 (Data Constructor)Epidemic.Model.InhomogeneousBDSCOD
InhomBDSPop 
1 (Type/Class)Epidemic.Model.InhomogeneousBDS
2 (Data Constructor)Epidemic.Model.InhomogeneousBDS
InhomBDSRates 
1 (Type/Class)Epidemic.Model.InhomogeneousBDS
2 (Data Constructor)Epidemic.Model.InhomogeneousBDS
inhomBDSRatesEpidemic.Model.InhomogeneousBDS
inhomExponentialEpidemic.Utility
inIntervalEpidemic.Types.Time
initialIdentifierEpidemic.Utility
ipInfectedPeopleEpidemic.Model.InhomogeneousBDSCOD
ipNumRemovedByCatastropheEpidemic.Model.InhomogeneousBDSCOD
ipNumRemovedByDeathEpidemic.Model.InhomogeneousBDSCOD
ipNumRemovedByDisasterEpidemic.Model.InhomogeneousBDSCOD
ipNumRemovedByOccurrenceEpidemic.Model.InhomogeneousBDSCOD
ipNumRemovedBySamplingEpidemic.Model.InhomogeneousBDSCOD
irBirthRateEpidemic.Model.InhomogeneousBDSCOD
irCatastropheSpecEpidemic.Model.InhomogeneousBDSCOD
irDeathRateEpidemic.Model.InhomogeneousBDSCOD
irDisasterSpecEpidemic.Model.InhomogeneousBDSCOD
irOccurrenceRateEpidemic.Model.InhomogeneousBDSCOD
irSamplingRateEpidemic.Model.InhomogeneousBDSCOD
isAfterEpidemic.Types.Time
isAscendingEpidemic.Types.Time
isBeforeEpidemic.Types.Time
isExtinctionOrStoppingEpidemic.Types.Events
isIndividualSampleEpidemic.Types.Events
isInfectedEpidemic.Types.Population
isReconTreeLeafEpidemic.Utility
LeafEpidemic.Types.Events
leftBraceBuilderEpidemic.Types.Newick
LogisticBDSDParameters 
1 (Type/Class)Epidemic.Model.LogisticBDSD
2 (Data Constructor)Epidemic.Model.LogisticBDSD
LogisticBDSDPopulation 
1 (Type/Class)Epidemic.Model.LogisticBDSD
2 (Data Constructor)Epidemic.Model.LogisticBDSD
maybeEpidemicTreeEpidemic.Types.Events
maybeNextTimedEpidemic.Types.Time
maybeReconstructedTreeEpidemic.Types.Observations
maybeToRightEpidemic.Utility
ModelParametersEpidemic.Types.Parameter
NewickEpidemic.Types.Newick
newPersonEpidemic.Utility
nextTimeEpidemic.Types.Time
noScheduledEventEpidemic
nullPeopleEpidemic.Types.Population
numPeopleEpidemic.Types.Population
Observation 
1 (Type/Class)Epidemic.Types.Observations
2 (Data Constructor)Epidemic.Types.Observations
observedEventsEpidemic.Types.Observations
paramsBirthRateEpidemic.Model.LogisticBDSD
paramsCapacityEpidemic.Model.LogisticBDSD
paramsDeathRateEpidemic.Model.LogisticBDSD
paramsDisastersEpidemic.Model.LogisticBDSD
paramsSamplingRateEpidemic.Model.LogisticBDSD
People 
1 (Type/Class)Epidemic.Types.Population
2 (Data Constructor)Epidemic.Types.Population
peopleInEventsEpidemic
Person 
1 (Type/Class)Epidemic.Types.Population
2 (Data Constructor)Epidemic.Types.Population
personByteStringEpidemic.Types.Population
personsInEventEpidemic
PointProcessEvents 
1 (Type/Class)Epidemic.Types.Observations
2 (Data Constructor)Epidemic.Types.Observations
pointProcessEventsEpidemic.Types.Observations
popSampPeopleEpidemic.Types.Events
popSampSeqEpidemic.Types.Events
popSampTimeEpidemic.Types.Events
PopulationEpidemic.Types.Population
PopulationSampleEpidemic.Types.Events
ProbabilityEpidemic.Types.Parameter
randomEvent 
1 (Function)Epidemic.Model.LogisticBDSD
2 (Function)Epidemic.Model.InhomogeneousBDSCOD
3 (Function)Epidemic.Model.InhomogeneousBDS
4 (Function)Epidemic.Model.BDSCOD
randomPersonEpidemic.Utility
RateEpidemic.Types.Parameter
RBranchEpidemic.Types.Observations
ReconstructedTreeEpidemic.Types.Observations
reconstructedTreeEventsEpidemic.Types.Observations
RemovalEpidemic.Types.Events
removedPeopleEpidemic.Types.Population
removePersonEpidemic.Types.Population
rightBraceBuilderEpidemic.Types.Newick
RLeafEpidemic.Types.Observations
rNaughtEpidemic.Types.Parameter
scNewIdentifierEpidemic.Types.Simulation
scPopulationEpidemic.Types.Simulation
scRatesEpidemic.Types.Simulation
scRequireCherryEpidemic.Types.Simulation
scSimDurationEpidemic.Types.Simulation
scStartTimeEpidemic.Types.Simulation
scTerminationHandlerEpidemic.Types.Simulation
ShootEpidemic.Types.Events
SimulationConfiguration 
1 (Type/Class)Epidemic.Types.Simulation
2 (Data Constructor)Epidemic.Types.Simulation
SimulationRandEvent 
1 (Type/Class)Epidemic.Types.Simulation
2 (Data Constructor)Epidemic.Types.Simulation
SimulationState 
1 (Type/Class)Epidemic.Types.Simulation
2 (Data Constructor)Epidemic.Types.Simulation
simulationWithFixedSeedEpidemic.Utility
simulationWithGenIOEpidemic.Utility
simulationWithSystemEpidemic.Utility
StoppingTimeEpidemic.Types.Events
susceptiblePeopleEpidemic.Types.Population
TerminatedSimulationEpidemic.Types.Simulation
TerminationHandler 
1 (Type/Class)Epidemic.Types.Simulation
2 (Data Constructor)Epidemic.Types.Simulation
timeAfterDeltaEpidemic.Types.Time
Timed 
1 (Type/Class)Epidemic.Types.Time
2 (Data Constructor)Epidemic.Types.Time
TimeDelta 
1 (Type/Class)Epidemic.Types.Time
2 (Data Constructor)Epidemic.Types.Time
timeDeltaEpidemic.Types.Time
timeIntDurationEpidemic.Types.Time
timeIntEndPointsEpidemic.Types.Time
TimeInterval 
1 (Type/Class)Epidemic.Types.Time
2 (Data Constructor)Epidemic.Types.Time
timeInterval1Epidemic.Types.Time
timeInterval2Epidemic.Types.Time
TimeStampEpidemic.Types.Time