| Safe Haskell | Safe |
|---|---|
| Language | Haskell98 |
Data.Fasta.ByteString.Translation
Description
Collects all functions pertaining to the translation of nucleotides to amino acids for ByteStrings
- chunksOf :: Int -> ByteString -> [ByteString]
- codon2aa :: Codon -> Either ByteString ByteString
- translate :: Int -> FastaSequence -> Either ByteString FastaSequence
Documentation
chunksOf :: Int -> ByteString -> [ByteString] Source
ByteString version of chunksOf
codon2aa :: Codon -> Either ByteString ByteString Source
Converts a codon to an amino acid Remember, if there is an N in that DNA sequence, then it is translated as an X, an unknown amino acid.
translate :: Int -> FastaSequence -> Either ByteString FastaSequence Source
Translates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid.