úÎkŻb(…      !"#$%&'()*+,-./0123456789:;<=>?@AB C D E F G H I J K L M N O P Q R S T U V W X Y Z [ \ ] ^ _ ` a b c d e f g h i j klmnopqrstuvwxyz{|}~€‚ƒ„SafeXA clone is a collection of sequences derived from a germline with a specific identifier      Safe<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.´Translates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid.NoneParse a standard fasta fileParse a CLIP fasta file…attopares any char but space†"attoparsec parser for a fasta type‡"attoparsec parser for a fasta fileˆ+attoparsec parser for a CLIP fasta sequence‰"attoparsec parser for a fasta fileParse a standard fasta fileParse a CLIP fasta file'Parse a standard fasta file into a pipe#Parse a CLIP fasta file into a pipe(Remove Ns from a collection of sequencesRemove Ns from a sequence3Remove Ns from a collection of CLIP fasta sequencesŠ‹ŒŽ…†‡ˆ‰  Š‹ŒŽ…†‡ˆ‰SafeXA clone is a collection of sequences derived from a germline with a specific identifier  !"#  !"  !"# !"#Safe'<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.(´Translates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid.'('('('(None)Parse a standard fasta file*Parse a CLIP fasta file‘attopares any char but space’"attoparsec parser for a fasta type“"attoparsec parser for a fasta file”+attoparsec parser for a CLIP fasta sequence•"attoparsec parser for a fasta file+Parse a standard fasta file,Parse a CLIP fasta file-'Parse a standard fasta file into a pipe.#Parse a CLIP fasta file into a pipe/(Remove Ns from a collection of sequences0Remove Ns from a sequence13Remove Ns from a collection of CLIP fasta sequences–—˜™š›)*‘’“”œ•+,-./01 )*+,-./01 )*+,-./01–—˜™š›)*‘’“”œ•+,-./01None !"'()*+,-./01None Safe4XA clone is a collection of sequences derived from a germline with a specific identifier 23456789:;< 23456789:; 89:;765423<23456789:;<Safe@<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.A¸Translates a string of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a string with the error if the codon is invalid.@A@A@A@A SafeB1Parse a standard fasta file into string sequencesC-Parse a CLIP fasta file into string sequencesD¨Parse a standard fasta file into string sequences for pipes. This is the highly recommeded way of parsing, as it is computationally fast and uses constant file memoryE(Remove Ns from a collection of sequencesFRemove Ns from a sequenceG3Remove Ns from a collection of CLIP fasta sequences žŸ Ą˘BCDEFGBCDEFGBCDEFG žŸ Ą˘BCDEFGSafe23456789:;@ABCDEFG SafeL+Returns the hydrophobicity of an amino acidHIJKLHIJKLHIJKLHIJKL SafeSXA clone is a collection of sequences derived from a germline with a specific identifier QRSTUVWXYZ[ QRSTUVWXYZ WXYZVUTSQR[QRSTUVWXYZ[ Safe_ByteString version of chunksOf`<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.aŔTranslates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid._`a_`a_`a_`a Noneb/Parse a standard fasta file into text sequencesc+Parse a CLIP fasta file into text sequencesŁattopares any char but space¤"attoparsec parser for a fasta typeĽ"attoparsec parser for a fasta fileŚ+attoparsec parser for a CLIP fasta sequence§"attoparsec parser for a fasta filedParse a standard fasta filee+Parse a CLIP fasta file into text sequencesf´Parse a standard fasta file into strict text sequences for pipes. This is the highly recommeded way of parsing, as it is computationally fast and uses memory based on line lengthg=Parse a CLIP fasta file into strict text sequences for pipes.h(Remove Ns from a collection of sequencesiRemove Ns from a sequencej3Remove Ns from a collection of CLIP fasta sequences¨ŠŞŤŹ­bcŁ¤ĽŚŽ§defghij bcdefghij bcdefghij¨ŠŞŤŹ­bcŁ¤ĽŚŽ§defghijSafemXA clone is a collection of sequences derived from a germline with a specific identifier klmnopqrstu klmnopqrst qrstponmkluklmnopqrstuSafey#Lazy ByteString version of chunksOfz<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.{ŔTranslates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid.yz{yz{yz{yz{None| Parse a standard fasta file into}Parse a CLIP fasta file intoŻattopares any char but space°"attoparsec parser for a fasta typeą"attoparsec parser for a fasta file˛+attoparsec parser for a CLIP fasta sequenceł"attoparsec parser for a fasta file~Parse a standard fasta file+Parse a CLIP fasta file into text sequences€'Parse a standard fasta file into a pipe=Parse a CLIP fasta file into strict text sequences for pipes.‚(Remove Ns from a collection of sequencesƒRemove Ns from a sequence„3Remove Ns from a collection of CLIP fasta sequences´ľśˇ¸š|}Ż°ą˛şł~€‚ƒ„ |}~€‚ƒ„ |}~€‚ƒ„´ľśˇ¸š|}Ż°ą˛şł~€‚ƒ„Noneklmnopqrstyz{|}~€‚ƒ„NoneQRSTUVWXYZ_`abcdefghijť !"#$%&'()*+,- !"#$%&'()*+,- !"#$ . / ) + , - 0 1 2 3 4 5 6 7 8            ! " 9 # $ % & ' ( ) * + , - !"9#$%&'()*+,-:;<=>?@ABCDE:;<=>?@ABCDE ? @ A B C D : ; < = > ? @ A B C D E:;<=>?@ABCDEF%fasta-0.10.1.0-G9WPXlkQQKt7fHkFlDSA9NData.Fasta.Text.TypesData.Fasta.Text.TranslationData.Fasta.Text.ParseData.Fasta.Text.Lazy.Types Data.Fasta.Text.Lazy.TranslationData.Fasta.Text.Lazy.ParseData.Fasta.String.TypesData.Fasta.String.TranslationData.Fasta.String.ParseData.Fasta.CategoryData.Fasta.ByteString.Types!Data.Fasta.ByteString.TranslationData.Fasta.ByteString.Parse Data.Fasta.ByteString.Lazy.Types&Data.Fasta.ByteString.Lazy.Translation Data.Fasta.ByteString.Lazy.ParseData.Fasta.Text.LazyData.Fasta.TextData.Fasta.StringData.Fasta.ByteString.LazyData.Fasta.ByteString ShowFasta showFastaCloneMapCodonGermlineClone FastaSequence fastaHeaderfastaSeq$fShowFastaFastaSequence$fEqFastaSequence$fOrdFastaSequence$fShowFastaSequencecodon2aa translate parsecFastaparsecCLIPFasta attoFasta attoCLIPFasta pipesFastapipesCLIPFastaremoveNsremoveN removeCLIPNs parseFastaparseCLIPFastaHydrophobicity HydrophobicNeutral HydrophilicaaToHydrophobicity$fEqHydrophobicity$fOrdHydrophobicity$fReadHydrophobicity$fShowHydrophobicitychunksOf anyButSpacefasta' fastaFile' fastaCLIP'fastaCLIPFile'eoleoefasta fastaFile fastaCLIP fastaCLIPFileclone'