ú΄zʁ      !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHI J K L M N O P Q R S T U V W X Y Z [ \ ] ^ _ ` a b c d e f g h i j k l m n o p q rstuvwxyz{|}~€SafeXA clone is a collection of sequences derived from a germline with a specific identifier      None  Parse a standard fasta file into Parse a CLIP fasta file intoattopares any char but space‚"attoparsec parser for a fasta typeƒ"attoparsec parser for a fasta file„+attoparsec parser for a CLIP fasta sequence…"attoparsec parser for a fasta fileParse a standard fasta file+Parse a CLIP fasta file into text sequences'Parse a standard fasta file into a pipe=Parse a CLIP fasta file into strict text sequences for pipes.(Remove Ns from a collection of sequencesRemove Ns from a sequence3Remove Ns from a collection of CLIP fasta sequences†‡ˆ‰Š‹ ‚ƒ„Œ…  †‡ˆ‰Š‹ ‚ƒ„Œ…Safe#Lazy ByteString version of chunksOf<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.&Translate a codon using a custom table˙ Translates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.ŔTranslates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid.None SafeXA clone is a collection of sequences derived from a germline with a specific identifier  !"#$%  !"#$ !"#$ % !"#$%None&/Parse a standard fasta file into text sequences'+Parse a CLIP fasta file into text sequencesattopares any char but spaceŽ"attoparsec parser for a fasta type"attoparsec parser for a fasta file+attoparsec parser for a CLIP fasta sequence‘"attoparsec parser for a fasta file(Parse a standard fasta file)+Parse a CLIP fasta file into text sequences*´Parse a standard fasta file into strict text sequences for pipes. This is the highly recommeded way of parsing, as it is computationally fast and uses memory based on line length+=Parse a CLIP fasta file into strict text sequences for pipes.,(Remove Ns from a collection of sequences-Remove Ns from a sequence.3Remove Ns from a collection of CLIP fasta sequences’“”•–—&'Ž˜‘()*+,-. &'()*+,-. &'()*+,-.’“”•–—&'Ž˜‘()*+,-.Safe/ByteString version of chunksOf0<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.1&Translate a codon using a custom table2˙ Translates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.3ŔTranslates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid./0123/0123/0132/0123None !"#$&'()*+,-./0123Safe6XA clone is a collection of sequences derived from a germline with a specific identifier 456789:;<=>? 456789:;<=> ;<=>:987645?456789:;<=>?None@Parse a standard fasta fileAParse a CLIP fasta file™attopares any char but spaceš"attoparsec parser for a fasta type›"attoparsec parser for a fasta fileœ+attoparsec parser for a CLIP fasta sequence"attoparsec parser for a fasta fileBParse a standard fasta fileCParse a CLIP fasta fileD'Parse a standard fasta file into a pipeE#Parse a CLIP fasta file into a pipeF(Remove Ns from a collection of sequencesGRemove Ns from a sequenceH3Remove Ns from a collection of CLIP fasta sequencesžŸ Ą˘Ł@A™š›œ¤BCDEFGH @ABCDEFGH @ABCDEFGHžŸ Ą˘Ł@A™š›œ¤BCDEFGH SafeI<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.J&Translate a codon using a custom tableKýTranslates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.L´Translates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid.IJKLIJKLIJLKIJKLNone456789:;<=>@ABCDEFGHIJKL SafeOXA clone is a collection of sequences derived from a germline with a specific identifier MNOPQRSTUVWX MNOPQRSTUVW TUVWSRQPOMNXMNOPQRSTUVWX NoneYParse a standard fasta fileZParse a CLIP fasta fileĽattopares any char but spaceŚ"attoparsec parser for a fasta type§"attoparsec parser for a fasta file¨+attoparsec parser for a CLIP fasta sequenceŠ"attoparsec parser for a fasta file[Parse a standard fasta file\Parse a CLIP fasta file]'Parse a standard fasta file into a pipe^#Parse a CLIP fasta file into a pipe_(Remove Ns from a collection of sequences`Remove Ns from a sequencea3Remove Ns from a collection of CLIP fasta sequencesŞŤŹ­ŽŻYZĽŚ§¨°Š[\]^_`a YZ[\]^_`a YZ[\]^_`aŞŤŹ­ŽŻYZĽŚ§¨°Š[\]^_`a Safeb<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.c&Translate a codon using a custom tabledýTranslates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.e´Translates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid.bcdebcdebcedbcdeNoneMNOPQRSTUVWYZ[\]^_`abcde SafehXA clone is a collection of sequences derived from a germline with a specific identifier fghijklmnopq fghijklmnop mnoplkjihfgqfghijklmnopqSafer1Parse a standard fasta file into string sequencess-Parse a CLIP fasta file into string sequencest¨Parse a standard fasta file into string sequences for pipes. This is the highly recommeded way of parsing, as it is computationally fast and uses constant file memoryu(Remove Ns from a collection of sequencesvRemove Ns from a sequencew3Remove Ns from a collection of CLIP fasta sequences ą˛ł´ľśrstuvwrstuvwrstuvw ą˛ł´ľśrstuvwSafex<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.y&Translate a codon using a custom tablez˙Translates a string of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a string with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.{¸Translates a string of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a string with the error if the codon is invalid.xyz{xyz{xy{zxyz{Safefghijklmnoprstuvwxyz{Safe€+Returns the hydrophobicity of an amino acid|}~€|}~€|}~€|}~€ˇ !"#$%&'()*+,-. !"#$%&'()*+,-. !"#$%&'() + , - .            ! " # $ % & ' ( ) + , - .            /0%'()+,-.123456789:;<=>?@A6789:;<=>?@A6789:;<=>?@A 6 7 8 9 : ; < = > ? @ A;<=>?@Bfasta_2rY0gWQLx3cCRuPc99zsiO Data.Fasta.ByteString.Lazy.Types Data.Fasta.ByteString.Lazy.Parse&Data.Fasta.ByteString.Lazy.TranslationData.Fasta.ByteString.TypesData.Fasta.ByteString.Parse!Data.Fasta.ByteString.TranslationData.Fasta.Text.Lazy.TypesData.Fasta.Text.Lazy.Parse Data.Fasta.Text.Lazy.TranslationData.Fasta.Text.TypesData.Fasta.Text.ParseData.Fasta.Text.TranslationData.Fasta.String.TypesData.Fasta.String.ParseData.Fasta.String.TranslationData.Fasta.CategoryData.Fasta.ByteString.LazyData.Fasta.ByteStringData.Fasta.Text.LazyData.Fasta.TextData.Fasta.String ShowFasta showFastaCloneMapGermlineCloneAACodon FastaSequence fastaHeaderfastaSeq$fShowFastaFastaSequence parsecFastaparsecCLIPFasta attoFasta attoCLIPFasta pipesFastapipesCLIPFastaremoveNsremoveN removeCLIPNschunksOfcodon2aacustomCodon2aacustomTranslate translate parseFastaparseCLIPFastaHydrophobicity HydrophobicNeutral HydrophilicaaToHydrophobicity anyButSpacefasta' fastaFile' fastaCLIP'fastaCLIPFile'eoleoefasta fastaFile fastaCLIP fastaCLIPFileclone'