-      !"#$%&'()*+,-./0123456789:;< = > ? @ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z [ \ ] ^ _ ` a b c d e f g hijklmnopqrstuvwxyz{|}~SafeXA clone is a collection of sequences derived from a germline with a specific identifier      None Parse a standard fasta file intoParse a CLIP fasta file intoattopares any char but space"attoparsec parser for a fasta type"attoparsec parser for a fasta file+attoparsec parser for a CLIP fasta sequence"attoparsec parser for a fasta fileParse a standard fasta file+Parse a CLIP fasta file into text sequences'Parse a standard fasta file into a pipe=Parse a CLIP fasta file into strict text sequences for pipes.(Remove Ns from a collection of sequencesRemove Ns from a sequence3Remove Ns from a collection of CLIP fasta sequences  Safe#Lazy ByteString version of chunksOf<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.&Translate a codon using a custom table Translates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.Translates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid.SafeVGets a 1 indexed field from the header of a fasta sequence using a certain delimiter.None Safe XA clone is a collection of sequences derived from a germline with a specific identifier  !"#$%&'()  !"#$%&'( %&'($#"! ) !"#$%&'()None-/Parse a standard fasta file into text sequences.+Parse a CLIP fasta file into text sequencesattopares any char but space"attoparsec parser for a fasta type"attoparsec parser for a fasta file+attoparsec parser for a CLIP fasta sequence"attoparsec parser for a fasta file/Parse a standard fasta file0+Parse a CLIP fasta file into text sequences1Parse a standard fasta file into strict text sequences for pipes. This is the highly recommeded way of parsing, as it is computationally fast and uses memory based on line length2=Parse a CLIP fasta file into strict text sequences for pipes.3(Remove Ns from a collection of sequences4Remove Ns from a sequence53Remove Ns from a collection of CLIP fasta sequences-./012345 -./012345 -./012345-./012345Safe6ByteString version of chunksOf7<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.8&Translate a codon using a custom table9 Translates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.:Translates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid.6789:6789:678:96789:Safe;VGets a 1 indexed field from the header of a fasta sequence using a certain delimiter.;;;;None !"#$%&'(-./0123456789:; Safe>XA clone is a collection of sequences derived from a germline with a specific identifier <=>?@ABCDEFG <=>?@ABCDEF CDEFBA@?><=G<=>?@ABCDEFG NoneKParse a standard fasta fileLParse a CLIP fasta fileattopares any char but space"attoparsec parser for a fasta type"attoparsec parser for a fasta file+attoparsec parser for a CLIP fasta sequence"attoparsec parser for a fasta fileMParse a standard fasta fileNParse a CLIP fasta fileO'Parse a standard fasta file into a pipeP#Parse a CLIP fasta file into a pipeQ(Remove Ns from a collection of sequencesRRemove Ns from a sequenceS3Remove Ns from a collection of CLIP fasta sequencesKLMNOPQRS KLMNOPQRS KLMNOPQRSKLMNOPQRS SafeT<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.U&Translate a codon using a custom tableVTranslates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.WTranslates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid.TUVWTUVWTUWVTUVW SafeXVGets a 1 indexed field from the header of a fasta sequence using a certain delimiter.XXXXNone<=>?@ABCDEFKLMNOPQRSTUVWX Safe[XA clone is a collection of sequences derived from a germline with a specific identifier YZ[\]^_`abcd YZ[\]^_`abc `abc_^]\[YZdYZ[\]^_`abcdNonehParse a standard fasta fileiParse a CLIP fasta fileattopares any char but space"attoparsec parser for a fasta type"attoparsec parser for a fasta file+attoparsec parser for a CLIP fasta sequence"attoparsec parser for a fasta filejParse a standard fasta filekParse a CLIP fasta filel'Parse a standard fasta file into a pipem#Parse a CLIP fasta file into a pipen(Remove Ns from a collection of sequencesoRemove Ns from a sequencep3Remove Ns from a collection of CLIP fasta sequenceshijklmnop hijklmnop hijklmnophijklmnopSafeq<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.r&Translate a codon using a custom tablesTranslates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.tTranslates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a text with the error if the codon is invalid.qrstqrstqrtsqrstSafeuVGets a 1 indexed field from the header of a fasta sequence using a certain delimiter.uuuuNoneYZ[\]^_`abchijklmnopqrstuSafexXA clone is a collection of sequences derived from a germline with a specific identifier vwxyz{|}~ vwxyz{|}~ }~|{zyxvwvwxyz{|}~Safe1Parse a standard fasta file into string sequences-Parse a CLIP fasta file into string sequencesParse a standard fasta file into string sequences for pipes. This is the highly recommeded way of parsing, as it is computationally fast and uses constant file memory(Remove Ns from a collection of sequencesRemove Ns from a sequence3Remove Ns from a collection of CLIP fasta sequences  Safe<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.&Translate a codon using a custom tableTranslates a string of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a string with the error if the codon is invalid. Also has customized codon translations as well overriding the defaults.Translates a string of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a string with the error if the codon is invalid.SafeVGets a 1 indexed field from the header of a fasta sequence using a certain delimiter.Safevwxyz{|}~Safe+Returns the hydrophobicity of an amino acid !""#$%&'()*+,-./01234567 !""#$%&'()*+,-./01234567       ! " " # $ % & ' ( ) * + , - . / 0 1 3 4 5 6 7       ! " " # $ % & ' ()*+,-./0134567 !""#$%&'(89-/0134567:;<=>?@ABCDEFGHIJKLMNCDEFGHIJKLMN C D E F G H I J K L M NCDEFGHIJKLMNHIJKLMO%fasta-0.10.3.0-8PZLqgnRYeGAX0y8Qihjig Data.Fasta.ByteString.Lazy.Types Data.Fasta.ByteString.Lazy.Parse&Data.Fasta.ByteString.Lazy.Translation"Data.Fasta.ByteString.Lazy.UtilityData.Fasta.ByteString.TypesData.Fasta.ByteString.Parse!Data.Fasta.ByteString.TranslationData.Fasta.ByteString.UtilityData.Fasta.Text.Lazy.TypesData.Fasta.Text.Lazy.Parse Data.Fasta.Text.Lazy.TranslationData.Fasta.Text.Lazy.UtilityData.Fasta.Text.TypesData.Fasta.Text.ParseData.Fasta.Text.TranslationData.Fasta.Text.UtilityData.Fasta.String.TypesData.Fasta.String.ParseData.Fasta.String.TranslationData.Fasta.String.UtilityData.Fasta.CategoryData.Fasta.ByteString.LazyData.Fasta.ByteStringData.Fasta.Text.LazyData.Fasta.TextData.Fasta.String ShowFasta showFastaCloneMapGermlineCloneAACodon FastaSequence fastaHeaderfastaSeq$fShowFastaFastaSequence$fEqFastaSequence$fOrdFastaSequence$fShowFastaSequence parsecFastaparsecCLIPFasta attoFasta attoCLIPFasta pipesFastapipesCLIPFastaremoveNsremoveN removeCLIPNschunksOfcodon2aacustomCodon2aacustomTranslate translategetField parseFastaparseCLIPFastaHydrophobicity HydrophobicNeutral HydrophilicaaToHydrophobicity$fEqHydrophobicity$fOrdHydrophobicity$fReadHydrophobicity$fShowHydrophobicity anyButSpacefasta' fastaFile' fastaCLIP'fastaCLIPFile'eoleoefasta fastaFile fastaCLIP fastaCLIPFileclone'