Data.Fasta.Text.Lazy.Parse

Collection of functions for the parsing of a fasta file. Uses the lazy Text type.

Documentation

parseFasta :: Text -> [FastaSequence]

Parse a standard fasta file into lazy text sequences

parseCLIPFasta :: Text -> CloneMap

Parse a CLIP fasta file into lazy text sequences

removeNs :: [FastaSequence] -> [FastaSequence]

Remove Ns from a collection of sequences

removeCLIPNs :: CloneMap -> CloneMap

Remove Ns from a collection of CLIP fasta sequences