| Safe Haskell | Safe-Inferred |
|---|---|
| Language | Haskell98 |
Data.Fasta.Text.Parse
Description
Collection of functions for the parsing of a fasta file. Uses the Text type.
- parseFasta :: Text -> [FastaSequence]
- parseCLIPFasta :: Text -> CloneMap
- removeNs :: [FastaSequence] -> [FastaSequence]
- removeN :: FastaSequence -> FastaSequence
- removeCLIPNs :: CloneMap -> CloneMap
Documentation
parseFasta :: Text -> [FastaSequence] Source
Parse a standard fasta file into text sequences
parseCLIPFasta :: Text -> CloneMap Source
Parse a CLIP fasta file into text sequences
removeNs :: [FastaSequence] -> [FastaSequence] Source
Remove Ns from a collection of sequences
removeN :: FastaSequence -> FastaSequence Source
Remove Ns from a sequence
removeCLIPNs :: CloneMap -> CloneMap Source
Remove Ns from a collection of CLIP fasta sequences