úÎh_Ėm      !"#$%&'()*+,-./0123456789:;<=>?@AB C D E F G H I J K L M N O P Q R S T U V W X Y Z [ \ ] ^ _ ` a b c d efghijklSafeXA clone is a collection of sequences derived from a germline with a specific identifier      None  Parse a standard fasta file into Parse a CLIP fasta file intomattopares any char but spacen"attoparsec parser for a fasta typeo"attoparsec parser for a fasta filep+attoparsec parser for a CLIP fasta sequenceq"attoparsec parser for a fasta file Parse a standard fasta file+Parse a CLIP fasta file into text sequences'Parse a standard fasta file into a pipe=Parse a CLIP fasta file into strict text sequences for pipes.(Remove Ns from a collection of sequencesRemove Ns from a sequence3Remove Ns from a collection of CLIP fasta sequencesrstuvw mnopxq   rstuvw mnopxq Safe#Lazy ByteString version of chunksOf<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.ĀTranslates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid.None SafeXA clone is a collection of sequences derived from a germline with a specific identifier  !   ! !None"/Parse a standard fasta file into text sequences#+Parse a CLIP fasta file into text sequencesyattopares any char but spacez"attoparsec parser for a fasta type{"attoparsec parser for a fasta file|+attoparsec parser for a CLIP fasta sequence}"attoparsec parser for a fasta file$Parse a standard fasta file%+Parse a CLIP fasta file into text sequences&īParse a standard fasta file into strict text sequences for pipes. This is the highly recommeded way of parsing, as it is computationally fast and uses memory based on line length'=Parse a CLIP fasta file into strict text sequences for pipes.((Remove Ns from a collection of sequences)Remove Ns from a sequence*3Remove Ns from a collection of CLIP fasta sequences~€‚ƒ"#yz{|„}$%&'()* "#$%&'()* "#$%&'()*~€‚ƒ"#yz{|„}$%&'()*Safe+ByteString version of chunksOf,<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.-ĀTranslates a bytestring of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a bytestring with the error if the codon is invalid.+,-+,-+,-+,-None "#$%&'()*+,-Safe0XA clone is a collection of sequences derived from a germline with a specific identifier ./012345678 ./01234567 45673210./8./012345678None9Parse a standard fasta file:Parse a CLIP fasta file…attopares any char but space†"attoparsec parser for a fasta type‡"attoparsec parser for a fasta fileˆ+attoparsec parser for a CLIP fasta sequence‰"attoparsec parser for a fasta file;Parse a standard fasta file<Parse a CLIP fasta file='Parse a standard fasta file into a pipe>#Parse a CLIP fasta file into a pipe?(Remove Ns from a collection of sequences@Remove Ns from a sequenceA3Remove Ns from a collection of CLIP fasta sequencesŠ‹ŒŽ9:…†‡ˆ‰;<=>?@A 9:;<=>?@A 9:;<=>?@AŠ‹ŒŽ9:…†‡ˆ‰;<=>?@A SafeB<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.CīTranslates a text of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. 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Returns a text with the error if the codon is invalid.XYXYXYXYNoneDEFGHIJKLMOPQRSTUVWXY Safe\XA clone is a collection of sequences derived from a germline with a specific identifier Z[\]^_`abcd Z[\]^_`abc `abc_^]\Z[dZ[\]^_`abcdSafee1Parse a standard fasta file into string sequencesf-Parse a CLIP fasta file into string sequencesgĻParse a standard fasta file into string sequences for pipes. This is the highly recommeded way of parsing, as it is computationally fast and uses constant file memoryh(Remove Ns from a collection of sequencesiRemove Ns from a sequencej3Remove Ns from a collection of CLIP fasta sequences žŸ ĄĒefghijefghijefghij žŸ ĄĒefghijSafek<Converts a codon to an amino acid Remember, if there is an NM in that DNA sequence, then it is translated as an X, an unknown amino acid.lļTranslates a string of nucleotides given a reading frame (1, 2, or 3) -- drops the first 0, 1, or 2 nucleotides respectively. Returns a string with the error if the codon is invalid.klklklklSafeZ[\]^_`abcefghijklĢ !"#$%&'()* !"#$%&'()* !"#$%&' ) *             ! " # $ % & ' ) *           +,#%&')*-./012345678-./012345678-./012345678 - . / 0 1 2 3 4 5 6 7 82345679fasta_LmyXKEqj7bs0Xzx7rP7cD9 Data.Fasta.ByteString.Lazy.Types Data.Fasta.ByteString.Lazy.Parse&Data.Fasta.ByteString.Lazy.TranslationData.Fasta.ByteString.TypesData.Fasta.ByteString.Parse!Data.Fasta.ByteString.TranslationData.Fasta.Text.Lazy.TypesData.Fasta.Text.Lazy.Parse Data.Fasta.Text.Lazy.TranslationData.Fasta.Text.TypesData.Fasta.Text.ParseData.Fasta.Text.TranslationData.Fasta.String.TypesData.Fasta.String.ParseData.Fasta.String.TranslationData.Fasta.ByteString.LazyData.Fasta.ByteStringData.Fasta.Text.LazyData.Fasta.TextData.Fasta.String ShowFasta showFastaCloneMapCodonGermlineClone FastaSequence fastaHeaderfastaSeq$fShowFastaFastaSequence parsecFastaparsecCLIPFasta attoFasta attoCLIPFasta pipesFastapipesCLIPFastaremoveNsremoveN removeCLIPNschunksOfcodon2aa translate parseFastaparseCLIPFasta anyButSpacefasta' fastaFile' fastaCLIP'fastaCLIPFile'eoleoefasta fastaFile fastaCLIP fastaCLIPFileclone'