Name:           flower
Version:        0.5
License:        GPL
Cabal-Version:  >= 1.6
Author:         Ketil Malde
Maintainer:     Ketil Malde <ketil@malde.org>

Category:       Bioinformatics
Synopsis:       Analyze 454 flowgrams  (.SFF files)
Description:    flower - FLOWgram ExtractoR tools
                .
                The flower executable reads files in SFF-format and produces various output, 
                including sequences with quality, or flowgram data in tabular format.
                .
                The fselect executable extracts reads from SFF-files, generating a new
                SFF-file with a subset of the reads based on various criteria.
                .
                Sometimes SFF files will appear to be corrupted, with all-zero blocks in the
                file. The frecover program ignores these and tries to resync with the file after an 
                invalid region.  This was likely a one-time bug in the 454 software, so this program
		is probably not so useful any more.
		.
                The Darcs repository is at <http://malde.org/~ketil/biohaskell/flower>.

HomePage:       http://malde.org/~ketil/biohaskell/flower
Build-Depends:  bio >= 0.4.2, base >=3 && <5, array >= 0.1, bytestring >= 0.9.1, binary == 0.4.*, random, cmdargs <= 0.1.1, containers
Build-Type:     Simple
Tested-with:    GHC==6.8.3

-- Data-files:     README

Executable:     flower
Main-Is:        Flower.hs
Other-Modules:  Print, Metrics
Hs-Source-Dirs: src
Ghc-Options:    

Executable:     flowselect
Main-Is:        FlowSelect.hs
Other-Modules:  Metrics
Hs-Source-Dirs: src
Extensions:     ExistentialQuantification

Executable:     frecover
Main-Is:        FRecover.hs
Hs-Source-Dirs: src

Executable:     frename
Main-Is:        FRename.hs
Hs-Source-Dirs: src

Executable:	flowt
Main-Is:	Flowt.hs
Hs-Source-Dirs:	src
Extensions:	DeriveDataTypeable