Name: flowsim Version: 0.2.8 License: GPL Cabal-Version: >= 1.6 Author: Ketil Malde Maintainer: Ketil Malde Category: Bioinformatics Synopsis: Simulate 454 pyrosequencing Description: Provides clonesim, a clone simulator that simulates shotgun genomic clones, and flowsim, that takes the output from clonesim (or any other Fasta-formatted file) and generates simulated reads from them mimicing Roche's 454 pyrosequencing technology, writing output in 454's native SFF format. The flowgram generation is based on empirical distributions derived from real data (although analytic distributions are available too, if you prefer). . The Darcs repository is at . HomePage: http://blog.malde.org/index.php/flowsim/ -- Build-Depends: bio >= 0.4.4, base >= 4 && <= 5, array >= 0.1, bytestring >= 0.9.1, random, MonadRandom, cmdargs <= 0.1.1, containers, directory Build-Type: Simple Tested-with: GHC==6.8.2, GHC==6.10, GHC==6.12.1 -- Data-files: README Executable flowsim Main-Is: FlowSim.hs Other-Modules: Statistics, Config, EmpFile Generations.GenBase, Generations.GS20, Generations.Titanium, Generations.Empirical Build-Depends: bio >= 0.4.4, base >= 4 && < 5, array >= 0.1, random, MonadRandom, cmdargs >= 0.5, containers, bytestring, directory Ghc-Options: -Wall Hs-Source-Dirs: src Executable hplc Build-Depends: bio >= 0.4.4, base >= 4 && < 5, containers, bytestring Main-Is: HPLCount.hs Ghc-Options: -main-is HPLCount Hs-Source-Dirs: src Executable clonesim Main-Is: CloneSim.hs Build-Depends: bio >= 0.4.4, base >= 4 && < 5, array >= 0.1, cmdargs >= 0.5, bytestring, MonadRandom Other-Modules: Statistics Extensions: DeriveDataTypeable Ghc-Options: -Wall Hs-Source-Dirs: src