Resolving dependencies... Configuring MonadRandom-0.1.12... Building MonadRandom-0.1.12... Preprocessing library MonadRandom-0.1.12... [1 of 2] Compiling Control.Monad.Random.Class ( Control/Monad/Random/Class.hs, dist/build/Control/Monad/Random/Class.o ) [2 of 2] Compiling Control.Monad.Random ( Control/Monad/Random.hs, dist/build/Control/Monad/Random.o ) In-place registering MonadRandom-0.1.12... Running Haddock for MonadRandom-0.1.12... Running hscolour for MonadRandom-0.1.12... Preprocessing library MonadRandom-0.1.12... Preprocessing library MonadRandom-0.1.12... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, mtl-2.1.2, random-1.0.1.1, transformers-0.3.0.0 Haddock coverage: Warning: Control.Monad.Random.Class: getRandom is exported separately but will be documented under MonadRandom. Consider exporting it together with its parent(s) for code clarity. Warning: Control.Monad.Random.Class: getRandomR is exported separately but will be documented under MonadRandom. Consider exporting it together with its parent(s) for code clarity. Warning: Control.Monad.Random.Class: getRandoms is exported separately but will be documented under MonadRandom. Consider exporting it together with its parent(s) for code clarity. Warning: Control.Monad.Random.Class: getRandomRs is exported separately but will be documented under MonadRandom. Consider exporting it together with its parent(s) for code clarity. Warning: Control.Monad.Random.Class: getSplit is exported separately but will be documented under MonadSplit. Consider exporting it together with its parent(s) for code clarity. 100% ( 3 / 3) in 'Control.Monad.Random.Class' Warning: MonadRandom-0.1.12:Control.Monad.Random: Could not find documentation for exported module: System.Random 100% ( 15 / 15) in 'Control.Monad.Random' Warning: Control.Monad.Random.Class: could not find link destinations for: System.Random.Random System.Random.random System.Random.randoms System.Random.randomR System.Random.randomRs Control.Monad.Trans.Identity.IdentityT Control.Monad.Trans.Maybe.MaybeT System.Random.RandomGen Control.Monad.Trans.Cont.ContT Control.Monad.Trans.Error.Error Control.Monad.Trans.Error.ErrorT Control.Monad.Trans.Reader.ReaderT Control.Monad.Trans.State.Lazy.StateT Control.Monad.Trans.Writer.Lazy.WriterT System.Random.StdGen Warning: Control.Monad.Random: could not find link destinations for: System.Random.RandomGen System.Random.StdGen Control.Monad.Reader.Class.MonadReader Control.Monad.State.Class.MonadState Control.Monad.Writer.Class.MonadWriter Control.Monad.Trans.Class.MonadTrans Control.Monad.IO.Class.MonadIO System.Random.Random Documentation created: dist/doc/html/MonadRandom/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/MonadRandom-0.1.12/ghc-7.6.3 Registering MonadRandom-0.1.12... Installed MonadRandom-0.1.12 Configuring cmdargs-0.10.5... Building cmdargs-0.10.5... Preprocessing library cmdargs-0.10.5... [ 1 of 25] Compiling System.Console.CmdArgs.Implicit.Ann ( System/Console/CmdArgs/Implicit/Ann.hs, dist/build/System/Console/CmdArgs/Implicit/Ann.o ) [ 2 of 25] Compiling System.Console.CmdArgs.Implicit.UI ( System/Console/CmdArgs/Implicit/UI.hs, dist/build/System/Console/CmdArgs/Implicit/UI.o ) [ 3 of 25] Compiling System.Console.CmdArgs.Verbosity ( System/Console/CmdArgs/Verbosity.hs, dist/build/System/Console/CmdArgs/Verbosity.o ) [ 4 of 25] Compiling System.Console.CmdArgs.Implicit.Type ( System/Console/CmdArgs/Implicit/Type.hs, dist/build/System/Console/CmdArgs/Implicit/Type.o ) [ 5 of 25] Compiling System.Console.CmdArgs.Explicit.SplitJoin ( System/Console/CmdArgs/Explicit/SplitJoin.hs, dist/build/System/Console/CmdArgs/Explicit/SplitJoin.o ) [ 6 of 25] Compiling System.Console.CmdArgs.Explicit.ExpandArgsAt ( System/Console/CmdArgs/Explicit/ExpandArgsAt.hs, dist/build/System/Console/CmdArgs/Explicit/ExpandArgsAt.o ) [ 7 of 25] Compiling System.Console.CmdArgs.Explicit.Type ( System/Console/CmdArgs/Explicit/Type.hs, dist/build/System/Console/CmdArgs/Explicit/Type.o ) [ 8 of 25] Compiling System.Console.CmdArgs.Explicit.Process ( System/Console/CmdArgs/Explicit/Process.hs, dist/build/System/Console/CmdArgs/Explicit/Process.o ) [ 9 of 25] Compiling System.Console.CmdArgs.Explicit.Complete ( System/Console/CmdArgs/Explicit/Complete.hs, dist/build/System/Console/CmdArgs/Explicit/Complete.o ) [10 of 25] Compiling System.Console.CmdArgs.Helper ( System/Console/CmdArgs/Helper.hs, dist/build/System/Console/CmdArgs/Helper.o ) [11 of 25] Compiling System.Console.CmdArgs.Default ( System/Console/CmdArgs/Default.hs, dist/build/System/Console/CmdArgs/Default.o ) [12 of 25] Compiling System.Console.CmdArgs.Text ( System/Console/CmdArgs/Text.hs, dist/build/System/Console/CmdArgs/Text.o ) [13 of 25] Compiling System.Console.CmdArgs.Explicit.Help ( System/Console/CmdArgs/Explicit/Help.hs, dist/build/System/Console/CmdArgs/Explicit/Help.o ) [14 of 25] Compiling System.Console.CmdArgs.Explicit ( System/Console/CmdArgs/Explicit.hs, dist/build/System/Console/CmdArgs/Explicit.o ) [15 of 25] Compiling System.Console.CmdArgs.GetOpt ( System/Console/CmdArgs/GetOpt.hs, dist/build/System/Console/CmdArgs/GetOpt.o ) [16 of 25] Compiling Data.Generics.Any ( Data/Generics/Any.hs, dist/build/Data/Generics/Any.o ) Data/Generics/Any.hs:65:17: Warning: In the use of `tyConString' (imported from Data.Data, but defined in Data.Typeable.Internal): Deprecated: "renamed to tyConName; tyConModule and tyConPackage are also available." [17 of 25] Compiling Data.Generics.Any.Prelude ( Data/Generics/Any/Prelude.hs, dist/build/Data/Generics/Any/Prelude.o ) [18 of 25] Compiling System.Console.CmdArgs.Implicit.Reader ( System/Console/CmdArgs/Implicit/Reader.hs, dist/build/System/Console/CmdArgs/Implicit/Reader.o ) [19 of 25] Compiling System.Console.CmdArgs.Annotate ( System/Console/CmdArgs/Annotate.hs, dist/build/System/Console/CmdArgs/Annotate.o ) [20 of 25] Compiling System.Console.CmdArgs.Implicit.Local ( System/Console/CmdArgs/Implicit/Local.hs, dist/build/System/Console/CmdArgs/Implicit/Local.o ) [21 of 25] Compiling System.Console.CmdArgs.Implicit.Reform ( System/Console/CmdArgs/Implicit/Reform.hs, dist/build/System/Console/CmdArgs/Implicit/Reform.o ) [22 of 25] Compiling System.Console.CmdArgs.Implicit.Global ( System/Console/CmdArgs/Implicit/Global.hs, dist/build/System/Console/CmdArgs/Implicit/Global.o ) [23 of 25] Compiling System.Console.CmdArgs.Implicit ( System/Console/CmdArgs/Implicit.hs, dist/build/System/Console/CmdArgs/Implicit.o ) [24 of 25] Compiling System.Console.CmdArgs ( System/Console/CmdArgs.hs, dist/build/System/Console/CmdArgs.o ) [25 of 25] Compiling System.Console.CmdArgs.Quote ( System/Console/CmdArgs/Quote.hs, dist/build/System/Console/CmdArgs/Quote.o ) In-place registering cmdargs-0.10.5... Running Haddock for cmdargs-0.10.5... Running hscolour for cmdargs-0.10.5... Preprocessing library cmdargs-0.10.5... Preprocessing library cmdargs-0.10.5... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, transformers-0.3.0.0 dist/build/tmp-3904/Data/Generics/Any.hs:65:17: Warning: In the use of `tyConString' (imported from Data.Data, but defined in Data.Typeable.Internal): Deprecated: "renamed to tyConName; tyConModule and tyConPackage are also available." Haddock coverage: 50% ( 1 / 2) in 'System.Console.CmdArgs.Implicit.Ann' 100% ( 21 / 21) in 'System.Console.CmdArgs.Implicit.UI' 100% ( 8 / 8) in 'System.Console.CmdArgs.Verbosity' 25% ( 2 / 8) in 'System.Console.CmdArgs.Implicit.Type' 67% ( 2 / 3) in 'System.Console.CmdArgs.Explicit.SplitJoin' 50% ( 1 / 2) in 'System.Console.CmdArgs.Explicit.ExpandArgsAt' 86% ( 24 / 28) in 'System.Console.CmdArgs.Explicit.Type' 50% ( 1 / 2) in 'System.Console.CmdArgs.Explicit.Process' 60% ( 3 / 5) in 'System.Console.CmdArgs.Explicit.Complete' 100% ( 8 / 8) in 'System.Console.CmdArgs.Helper' 100% ( 2 / 2) in 'System.Console.CmdArgs.Default' 100% ( 5 / 5) in 'System.Console.CmdArgs.Text' 67% ( 2 / 3) in 'System.Console.CmdArgs.Explicit.Help' 93% ( 43 / 46) in 'System.Console.CmdArgs.Explicit' 100% ( 8 / 8) in 'System.Console.CmdArgs.GetOpt' 4% ( 1 / 26) in 'Data.Generics.Any' 0% ( 0 / 20) in 'Data.Generics.Any.Prelude' 0% ( 0 / 3) in 'System.Console.CmdArgs.Implicit.Reader' 100% ( 17 / 17) in 'System.Console.CmdArgs.Annotate' 9% ( 1 / 11) in 'System.Console.CmdArgs.Implicit.Local' 0% ( 0 / 2) in 'System.Console.CmdArgs.Implicit.Reform' 0% ( 0 / 2) in 'System.Console.CmdArgs.Implicit.Global' 100% ( 50 / 50) in 'System.Console.CmdArgs.Implicit' 100% ( 9 / 9) in 'System.Console.CmdArgs.Quote' 100% ( 2 / 2) in 'System.Console.CmdArgs' Warning: System.Console.CmdArgs.Implicit: could not find link destinations for: System.Console.CmdArgs.Implicit.Type.CmdArgsPrivate GHC.IO.Handle.Types.Handle__ Documentation created: dist/doc/html/cmdargs/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/cmdargs-0.10.5/ghc-7.6.3 Registering cmdargs-0.10.5... Installed cmdargs-0.10.5 Configuring system-filepath-0.4.8... Building system-filepath-0.4.8... Preprocessing library system-filepath-0.4.8... [1 of 4] Compiling Filesystem.Path.Internal ( lib/Filesystem/Path/Internal.hs, dist/build/Filesystem/Path/Internal.o ) [2 of 4] Compiling Filesystem.Path ( lib/Filesystem/Path.hs, dist/build/Filesystem/Path.o ) [3 of 4] Compiling Filesystem.Path.Rules ( lib/Filesystem/Path/Rules.hs, dist/build/Filesystem/Path/Rules.o ) [4 of 4] Compiling Filesystem.Path.CurrentOS ( lib/Filesystem/Path/CurrentOS.hs, dist/build/Filesystem/Path/CurrentOS.o ) In-place registering system-filepath-0.4.8... Running Haddock for system-filepath-0.4.8... Running hscolour for system-filepath-0.4.8... Preprocessing library system-filepath-0.4.8... Preprocessing library system-filepath-0.4.8... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 9% ( 2 / 23) in 'Filesystem.Path.Internal' 97% ( 33 / 34) in 'Filesystem.Path' 94% ( 17 / 18) in 'Filesystem.Path.Rules' 92% ( 12 / 13) in 'Filesystem.Path.CurrentOS' Warning: Filesystem.Path: could not find link destinations for: Data.Text.Internal.Text Warning: Filesystem.Path.Rules: could not find link destinations for: Data.Text.Internal.Text Warning: Filesystem.Path.CurrentOS: could not find link destinations for: Data.Text.Internal.Text Documentation created: dist/doc/html/system-filepath/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/system-filepath-0.4.8/ghc-7.6.3 Registering system-filepath-0.4.8... Installed system-filepath-0.4.8 Configuring stringable-0.1.2... Building stringable-0.1.2... Preprocessing library stringable-0.1.2... [1 of 1] Compiling Data.Stringable ( Data/Stringable.hs, dist/build/Data/Stringable.o ) In-place registering stringable-0.1.2... Running Haddock for stringable-0.1.2... Running hscolour for stringable-0.1.2... Preprocessing library stringable-0.1.2... Preprocessing library stringable-0.1.2... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 0% ( 0 / 3) in 'Data.Stringable' Warning: Data.Stringable: could not find link destinations for: Data.Text.Internal.Text Data.Text.Lazy.Internal.Text Documentation created: dist/doc/html/stringable/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/stringable-0.1.2/ghc-7.6.3 Registering stringable-0.1.2... Installed stringable-0.1.2 Configuring biocore-0.3.1... Building biocore-0.3.1... Preprocessing library biocore-0.3.1... [1 of 3] Compiling Bio.Core.Strand ( src/Bio/Core/Strand.hs, dist/build/Bio/Core/Strand.o ) [2 of 3] Compiling Bio.Core.Sequence ( src/Bio/Core/Sequence.hs, dist/build/Bio/Core/Sequence.o ) [3 of 3] Compiling Bio.Core ( src/Bio/Core.hs, dist/build/Bio/Core.o ) In-place registering biocore-0.3.1... Running Haddock for biocore-0.3.1... Running hscolour for biocore-0.3.1... Preprocessing library biocore-0.3.1... Preprocessing library biocore-0.3.1... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 100% ( 2 / 2) in 'Bio.Core.Strand' 100% ( 15 / 15) in 'Bio.Core.Sequence' 100% ( 3 / 3) in 'Bio.Core' Documentation created: dist/doc/html/biocore/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/biocore-0.3.1/ghc-7.6.3 Registering biocore-0.3.1... Installed biocore-0.3.1 Configuring biofasta-0.0.3... Building biofasta-0.0.3... Preprocessing library biofasta-0.0.3... [1 of 1] Compiling Bio.Sequence.Fasta ( src/Bio/Sequence/Fasta.hs, dist/build/Bio/Sequence/Fasta.o ) In-place registering biofasta-0.0.3... Running Haddock for biofasta-0.0.3... Running hscolour for biofasta-0.0.3... Preprocessing library biofasta-0.0.3... Preprocessing library biofasta-0.0.3... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, text-0.11.2.3 Haddock coverage: 59% ( 10 / 17) in 'Bio.Sequence.Fasta' Documentation created: dist/doc/html/biofasta/index.html Installing library in /srv/hackage/var/build/tmp-install/lib/biofasta-0.0.3/ghc-7.6.3 Registering biofasta-0.0.3... Installed biofasta-0.0.3 Downloading biosff-0.3.7.1... Configuring biosff-0.3.7.1... Building biosff-0.3.7.1... Preprocessing library biosff-0.3.7.1... [1 of 3] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/Bio/Sequence/SFF_name.o ) [2 of 3] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/Bio/Sequence/SFF.o ) [3 of 3] Compiling Bio.Sequence.SFF_filters ( src/Bio/Sequence/SFF_filters.hs, dist/build/Bio/Sequence/SFF_filters.o ) In-place registering biosff-0.3.7.1... Preprocessing executable 'frecover' for biosff-0.3.7.1... [1 of 3] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/frecover/frecover-tmp/Bio/Sequence/SFF_name.o ) [2 of 3] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/frecover/frecover-tmp/Bio/Sequence/SFF.o ) [3 of 3] Compiling Main ( src/FRecover/Main.hs, dist/build/frecover/frecover-tmp/Main.o ) Linking dist/build/frecover/frecover ... Preprocessing executable 'flower' for biosff-0.3.7.1... [1 of 8] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF_name.o ) [2 of 8] Compiling Fork ( src/Flower/Fork.hs, dist/build/flower/flower-tmp/Fork.o ) [3 of 8] Compiling Options ( src/Flower/Options.hs, dist/build/flower/flower-tmp/Options.o ) [4 of 8] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF.o ) [5 of 8] Compiling Bio.Sequence.SFF_filters ( src/Bio/Sequence/SFF_filters.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF_filters.o ) [6 of 8] Compiling Metrics ( src/Flower/Metrics.hs, dist/build/flower/flower-tmp/Metrics.o ) [7 of 8] Compiling Print ( src/Flower/Print.hs, dist/build/flower/flower-tmp/Print.o ) [8 of 8] Compiling Main ( src/Flower/Main.hs, dist/build/flower/flower-tmp/Main.o ) src/Flower/Main.hs:76:1: Warning: Defined but not used: `isEmpty' src/Flower/Main.hs:76:1: Warning: Top-level binding with no type signature: isEmpty :: forall t. t -> Bool src/Flower/Main.hs:76:9: Warning: Defined but not used: `r' Linking dist/build/flower/flower ... Preprocessing executable 'fclip' for biosff-0.3.7.1... [1 of 4] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/fclip/fclip-tmp/Bio/Sequence/SFF_name.o ) [2 of 4] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/fclip/fclip-tmp/Bio/Sequence/SFF.o ) [3 of 4] Compiling Options ( src/FClip/Options.hs, dist/build/fclip/fclip-tmp/Options.o ) [4 of 4] Compiling Main ( src/FClip/Main.hs, dist/build/fclip/fclip-tmp/Main.o ) Linking dist/build/fclip/fclip ... Running Haddock for biosff-0.3.7.1... Running hscolour for biosff-0.3.7.1... Preprocessing library biosff-0.3.7.1... Preprocessing executable 'frecover' for biosff-0.3.7.1... Preprocessing executable 'flower' for biosff-0.3.7.1... Preprocessing executable 'fclip' for biosff-0.3.7.1... Preprocessing library biosff-0.3.7.1... Warning: The documentation for the following packages are not installed. No links will be generated to these packages: rts-1.0, mtl-2.1.2, text-0.11.2.3, transformers-0.3.0.0 Haddock coverage: 7% ( 1 / 14) in 'Bio.Sequence.SFF_name' 91% ( 30 / 33) in 'Bio.Sequence.SFF' 66% ( 19 / 29) in 'Bio.Sequence.SFF_filters' Documentation created: dist/doc/html/biosff/index.html Preprocessing executable 'frecover' for biosff-0.3.7.1... Preprocessing executable 'flower' for biosff-0.3.7.1... Preprocessing executable 'fclip' for biosff-0.3.7.1... Installing library in /srv/hackage/var/build/tmp-install/lib/biosff-0.3.7.1/ghc-7.6.3 Installing executable(s) in /srv/hackage/var/build/tmp-install/bin Registering biosff-0.3.7.1... Installed biosff-0.3.7.1 Downloading flowsim-0.3.5... Configuring flowsim-0.3.5... Building flowsim-0.3.5... Preprocessing executable 'mutator' for flowsim-0.3.5... [1 of 3] Compiling Version ( src/Version.hs, dist/build/mutator/mutator-tmp/Version.o ) [2 of 3] Compiling Statistics ( src/Statistics.hs, dist/build/mutator/mutator-tmp/Statistics.o ) [3 of 3] Compiling Mutator ( src/Mutator.hs, dist/build/mutator/mutator-tmp/Mutator.o ) src/Mutator.hs:53:17: Warning: Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: ghc-prim:GHC.Types.I# #x with #x `notElem` [0#, 1#, 2#, 3#] Linking dist/build/mutator/mutator ... Preprocessing executable 'kitsim' for flowsim-0.3.5... [1 of 2] Compiling Version ( src/Version.hs, dist/build/kitsim/kitsim-tmp/Version.o ) [2 of 2] Compiling KitSim ( src/KitSim.hs, dist/build/kitsim/kitsim-tmp/KitSim.o ) Linking dist/build/kitsim/kitsim ... Preprocessing executable 'hplc' for flowsim-0.3.5... [1 of 1] Compiling HPLCount ( src/HPLCount.hs, dist/build/hplc/hplc-tmp/HPLCount.o ) Linking dist/build/hplc/hplc ... Preprocessing executable 'gelfilter' for flowsim-0.3.5... [1 of 1] Compiling GelFilter ( src/GelFilter.hs, dist/build/gelfilter/gelfilter-tmp/GelFilter.o ) src/GelFilter.hs:13:4: Warning: This binding for `min' shadows the existing binding imported from `Prelude' at src/GelFilter.hs:3:8-16 (and originally defined in `ghc-prim:GHC.Classes') src/GelFilter.hs:13:8: Warning: This binding for `max' shadows the existing binding imported from `Prelude' at src/GelFilter.hs:3:8-16 (and originally defined in `ghc-prim:GHC.Classes') Linking dist/build/gelfilter/gelfilter ... Preprocessing executable 'flowsim' for flowsim-0.3.5... [ 1 of 10] Compiling HPLCount ( src/HPLCount.hs, dist/build/flowsim/flowsim-tmp/HPLCount.o ) [ 2 of 10] Compiling Version ( src/Version.hs, dist/build/flowsim/flowsim-tmp/Version.o ) [ 3 of 10] Compiling Statistics ( src/Statistics.hs, dist/build/flowsim/flowsim-tmp/Statistics.o ) [ 4 of 10] Compiling Generations.GenBase ( src/Generations/GenBase.hs, dist/build/flowsim/flowsim-tmp/Generations/GenBase.o ) [ 5 of 10] Compiling Generations.GS20 ( src/Generations/GS20.hs, dist/build/flowsim/flowsim-tmp/Generations/GS20.o ) [ 6 of 10] Compiling Generations.Titanium ( src/Generations/Titanium.hs, dist/build/flowsim/flowsim-tmp/Generations/Titanium.o ) src/Generations/Titanium.hs:4:1: Warning: The qualified import of `Data.ByteString.Char8' is redundant except perhaps to import instances from `Data.ByteString.Char8' To import instances alone, use: import Data.ByteString.Char8() [ 7 of 10] Compiling EmpFile ( src/EmpFile.hs, dist/build/flowsim/flowsim-tmp/EmpFile.o ) [ 8 of 10] Compiling Generations.Empirical ( src/Generations/Empirical.hs, dist/build/flowsim/flowsim-tmp/Generations/Empirical.o ) src/Generations/Empirical.hs:3:1: Warning: The qualified import of `Data.ByteString.Char8' is redundant except perhaps to import instances from `Data.ByteString.Char8' To import instances alone, use: import Data.ByteString.Char8() [ 9 of 10] Compiling Config ( src/Config.hs, dist/build/flowsim/flowsim-tmp/Config.o ) src/Config.hs:100:7: Warning: Defined but not used: `setG' src/Config.hs:103:7: Warning: Defined but not used: `setF' src/Config.hs:105:7: Warning: Defined but not used: `setT' src/Config.hs:134:1: Warning: Top-level binding with no type signature: filterlist :: forall a. [a] src/Config.hs:137:1: Warning: Top-level binding with no type signature: trimlist :: forall a. [a] [10 of 10] Compiling Main ( src/FlowSim.hs, dist/build/flowsim/flowsim-tmp/Main.o ) src/FlowSim.hs:72:18: Warning: Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: [] src/FlowSim.hs:156:50: Warning: In the use of `seqlabel' (imported from Bio.Core.Sequence): Deprecated: "Warning: 'seqlabel' is deprecated, use 'seqid' or 'seqheader' instead." Linking dist/build/flowsim/flowsim ... Preprocessing executable 'filtersff' for flowsim-0.3.5... [1 of 9] Compiling HPLCount ( src/HPLCount.hs, dist/build/filtersff/filtersff-tmp/HPLCount.o ) [2 of 9] Compiling Statistics ( src/Statistics.hs, dist/build/filtersff/filtersff-tmp/Statistics.o ) [3 of 9] Compiling EmpFile ( src/EmpFile.hs, dist/build/filtersff/filtersff-tmp/EmpFile.o ) [4 of 9] Compiling Generations.GenBase ( src/Generations/GenBase.hs, dist/build/filtersff/filtersff-tmp/Generations/GenBase.o ) [5 of 9] Compiling Generations.GS20 ( src/Generations/GS20.hs, dist/build/filtersff/filtersff-tmp/Generations/GS20.o ) [6 of 9] Compiling Generations.Titanium ( src/Generations/Titanium.hs, dist/build/filtersff/filtersff-tmp/Generations/Titanium.o ) src/Generations/Titanium.hs:4:1: Warning: The qualified import of `Data.ByteString.Char8' is redundant except perhaps to import instances from `Data.ByteString.Char8' To import instances alone, use: import Data.ByteString.Char8() [7 of 9] Compiling Generations.Empirical ( src/Generations/Empirical.hs, dist/build/filtersff/filtersff-tmp/Generations/Empirical.o ) src/Generations/Empirical.hs:3:1: Warning: The qualified import of `Data.ByteString.Char8' is redundant except perhaps to import instances from `Data.ByteString.Char8' To import instances alone, use: import Data.ByteString.Char8() [8 of 9] Compiling Version ( src/Version.hs, dist/build/filtersff/filtersff-tmp/Version.o ) [9 of 9] Compiling FilterSFF ( src/FilterSFF.hs, dist/build/filtersff/filtersff-tmp/FilterSFF.o ) Linking dist/build/filtersff/filtersff ... Preprocessing executable 'duplicator' for flowsim-0.3.5... [1 of 2] Compiling Statistics ( src/Statistics.hs, dist/build/duplicator/duplicator-tmp/Statistics.o ) [2 of 2] Compiling Duplicator ( src/Duplicator.hs, dist/build/duplicator/duplicator-tmp/Duplicator.o ) src/Duplicator.hs:18:20: Warning: Pattern match(es) are non-exhaustive In a case alternative: Patterns not matched: _ : (_ : _) Linking dist/build/duplicator/duplicator ... Preprocessing executable 'clonesim' for flowsim-0.3.5... [1 of 3] Compiling Version ( src/Version.hs, dist/build/clonesim/clonesim-tmp/Version.o ) [2 of 3] Compiling Statistics ( src/Statistics.hs, dist/build/clonesim/clonesim-tmp/Statistics.o ) [3 of 3] Compiling Main ( src/CloneSim.hs, dist/build/clonesim/clonesim-tmp/Main.o ) src/CloneSim.hs:82:9: Warning: Pattern match(es) are non-exhaustive In an equation for `go': Patterns not matched: (_, _) src/CloneSim.hs:115:1: Warning: Top-level binding with no type signature: defragSeq :: forall a. a -> a Linking dist/build/clonesim/clonesim ... Warning: No documentation was generated as this package does not contain a library. Perhaps you want to use the --executables flag. Installing executable(s) in /srv/hackage/var/build/tmp-install/bin Installed flowsim-0.3.5