Bio.PDB.Fasta

Documentation

resname2fastacode :: String -> Char

Dictionary mapping three-letter PDB residue code to a single-letter FASTA code.

fastacode2resname :: Char -> String

Dictionary mapping single-letter FASTA standard aminoacid code to a PDB residue name

defaultResname :: String

Three-letter PDB code for an unknown type of residue.

defaultFastaCode :: Char

One-letter aminoacid code for an unknown type of residue.

fastaSequence :: Iterable a Residue => a -> [Char]

Converts an Iterable yielding Residues into a list of aminoacid one-character codes.

fastaGappedSequence :: Iterable a Residue => a -> [Char]

Converts an Iterable yielding Residues into a list of aminoacid one-character codes.

fastaRecord :: [Char] -> Chain -> [Char]

fastaGappedRecord :: [Char] -> Chain -> [Char]