Resolving dependencies... Configuring AC-Vector-2.3.2... Configuring mmap-0.5.9... Building AC-Vector-2.3.2... Building mmap-0.5.9... Installed mmap-0.5.9 Configuring mtl-2.2.1... Building mtl-2.2.1... Configuring parallel-3.2.1.0... Installed AC-Vector-2.3.2 Building parallel-3.2.1.0... Configuring random-1.1... Installed parallel-3.2.1.0 Configuring primitive-0.6.1.0... Installed mtl-2.2.1 Building random-1.1... Building primitive-0.6.1.0... Configuring text-1.2.2.1... Installed random-1.1 Building text-1.2.2.1... Configuring transformers-compat-0.5.1.4... Installed primitive-0.6.1.0 Building transformers-compat-0.5.1.4... Configuring zlib-0.6.1.2... Installed transformers-compat-0.5.1.4 Building zlib-0.6.1.2... Installed zlib-0.6.1.2 Configuring tf-random-0.5... Building tf-random-0.5... Configuring tagged-0.8.5... Installed tf-random-0.5 Building tagged-0.8.5... Configuring vector-0.11.0.0... Installed text-1.2.2.1 Installed tagged-0.8.5 Configuring QuickCheck-2.9.2... Building vector-0.11.0.0... Building QuickCheck-2.9.2... Configuring hashable-1.2.4.0... Installed QuickCheck-2.9.2 Building hashable-1.2.4.0... Installed hashable-1.2.4.0 Configuring Octree-0.5.4.3... Building Octree-0.5.4.3... Configuring unordered-containers-0.2.7.1... Installed vector-0.11.0.0 Configuring iterable-3.0... Installed Octree-0.5.4.3 Building unordered-containers-0.2.7.1... Building iterable-3.0... Installed iterable-3.0 Installed unordered-containers-0.2.7.1 Downloading hPDB-1.2.0.7... Configuring hPDB-1.2.0.7... Building hPDB-1.2.0.7... Failed to install hPDB-1.2.0.7 Build log ( /home/builder/.cabal/logs/hPDB-1.2.0.7.log ): cabal: Entering directory '/tmp/cabal-tmp-6308/hPDB-1.2.0.7' Configuring hPDB-1.2.0.7... Building hPDB-1.2.0.7... Preprocessing library hPDB-1.2.0.7... Bio/PDB/Iterable/Instances.hs:1:78: warning: -XOverlappingInstances is deprecated: instead use per-instance pragmas OVERLAPPING/OVERLAPPABLE/OVERLAPS [ 1 of 60] Compiling Bio.PDB.Util.ParFold ( Bio/PDB/Util/ParFold.hs, dist/build/Bio/PDB/Util/ParFold.o ) [ 2 of 60] Compiling Bio.PDB.Util.MissingInstances ( Bio/PDB/Util/MissingInstances.hs, dist/build/Bio/PDB/Util/MissingInstances.o ) [ 3 of 60] Compiling Bio.PDB.Structure.Vector ( Bio/PDB/Structure/Vector.hs, dist/build/Bio/PDB/Structure/Vector.o ) [ 4 of 60] Compiling Bio.PDB.Structure.List ( Bio/PDB/Structure/List.hs, dist/build/Bio/PDB/Structure/List.o ) [ 5 of 60] Compiling Bio.PDB.IO.OpenAnyFile ( Bio/PDB/IO/OpenAnyFile.hs, dist/build/Bio/PDB/IO/OpenAnyFile.o ) [ 6 of 60] Compiling Bio.PDB.EventParser.StrandSense ( Bio/PDB/EventParser/StrandSense.hs, dist/build/Bio/PDB/EventParser/StrandSense.o ) [ 7 of 60] Compiling Bio.PDB.EventParser.HelixTypes ( Bio/PDB/EventParser/HelixTypes.hs, dist/build/Bio/PDB/EventParser/HelixTypes.o ) [ 8 of 60] Compiling Bio.PDB.EventParser.FastParse ( Bio/PDB/EventParser/FastParse.hs, dist/build/Bio/PDB/EventParser/FastParse.o ) [ 9 of 60] Compiling Bio.PDB.EventParser.ExperimentalMethods ( Bio/PDB/EventParser/ExperimentalMethods.hs, dist/build/Bio/PDB/EventParser/ExperimentalMethods.o ) [10 of 60] Compiling Bio.PDB.Common ( Bio/PDB/Common.hs, dist/build/Bio/PDB/Common.o ) [11 of 60] Compiling Bio.PDB.EventParser.PDBEvents ( Bio/PDB/EventParser/PDBEvents.hs, dist/build/Bio/PDB/EventParser/PDBEvents.o ) [12 of 60] Compiling Bio.PDB.EventParser.PDBEventPrinter ( Bio/PDB/EventParser/PDBEventPrinter.hs, dist/build/Bio/PDB/EventParser/PDBEventPrinter.o ) [13 of 60] Compiling Bio.PDB.EventParser.PDBParsingAbstractions ( Bio/PDB/EventParser/PDBParsingAbstractions.hs, dist/build/Bio/PDB/EventParser/PDBParsingAbstractions.o ) [14 of 60] Compiling Bio.PDB.EventParser.ParseATOM ( Bio/PDB/EventParser/ParseATOM.hs, dist/build/Bio/PDB/EventParser/ParseATOM.o ) [15 of 60] Compiling Bio.PDB.EventParser.ParseCAVEAT ( Bio/PDB/EventParser/ParseCAVEAT.hs, dist/build/Bio/PDB/EventParser/ParseCAVEAT.o ) [16 of 60] Compiling Bio.PDB.EventParser.ParseCISPEP ( Bio/PDB/EventParser/ParseCISPEP.hs, dist/build/Bio/PDB/EventParser/ParseCISPEP.o ) [17 of 60] Compiling Bio.PDB.EventParser.ParseCONECT ( Bio/PDB/EventParser/ParseCONECT.hs, dist/build/Bio/PDB/EventParser/ParseCONECT.o ) [18 of 60] Compiling Bio.PDB.EventParser.ParseCRYST1 ( Bio/PDB/EventParser/ParseCRYST1.hs, dist/build/Bio/PDB/EventParser/ParseCRYST1.o ) [19 of 60] Compiling Bio.PDB.EventParser.ParseDBREF ( Bio/PDB/EventParser/ParseDBREF.hs, dist/build/Bio/PDB/EventParser/ParseDBREF.o ) [20 of 60] Compiling Bio.PDB.EventParser.ParseFORMUL ( Bio/PDB/EventParser/ParseFORMUL.hs, dist/build/Bio/PDB/EventParser/ParseFORMUL.o ) [21 of 60] Compiling Bio.PDB.EventParser.ParseHEADER ( Bio/PDB/EventParser/ParseHEADER.hs, dist/build/Bio/PDB/EventParser/ParseHEADER.o ) [22 of 60] Compiling Bio.PDB.EventParser.ParseHELIX ( Bio/PDB/EventParser/ParseHELIX.hs, dist/build/Bio/PDB/EventParser/ParseHELIX.o ) [23 of 60] Compiling Bio.PDB.EventParser.ParseHET ( Bio/PDB/EventParser/ParseHET.hs, dist/build/Bio/PDB/EventParser/ParseHET.o ) [24 of 60] Compiling Bio.PDB.EventParser.ParseHETNAM ( Bio/PDB/EventParser/ParseHETNAM.hs, dist/build/Bio/PDB/EventParser/ParseHETNAM.o ) [25 of 60] Compiling Bio.PDB.EventParser.ParseHYDBND ( Bio/PDB/EventParser/ParseHYDBND.hs, dist/build/Bio/PDB/EventParser/ParseHYDBND.o ) [26 of 60] Compiling Bio.PDB.EventParser.ParseIntRecord ( Bio/PDB/EventParser/ParseIntRecord.hs, dist/build/Bio/PDB/EventParser/ParseIntRecord.o ) [27 of 60] Compiling Bio.PDB.EventParser.ParseJRNL ( Bio/PDB/EventParser/ParseJRNL.hs, dist/build/Bio/PDB/EventParser/ParseJRNL.o ) [28 of 60] Compiling Bio.PDB.EventParser.ParseLINK ( Bio/PDB/EventParser/ParseLINK.hs, dist/build/Bio/PDB/EventParser/ParseLINK.o ) [29 of 60] Compiling Bio.PDB.EventParser.ParseListRecord ( Bio/PDB/EventParser/ParseListRecord.hs, dist/build/Bio/PDB/EventParser/ParseListRecord.o ) [30 of 60] Compiling Bio.PDB.EventParser.ParseMASTER ( Bio/PDB/EventParser/ParseMASTER.hs, dist/build/Bio/PDB/EventParser/ParseMASTER.o ) [31 of 60] Compiling Bio.PDB.EventParser.ParseMODRES ( Bio/PDB/EventParser/ParseMODRES.hs, dist/build/Bio/PDB/EventParser/ParseMODRES.o ) [32 of 60] Compiling Bio.PDB.EventParser.ParseMatrixRecord ( Bio/PDB/EventParser/ParseMatrixRecord.hs, dist/build/Bio/PDB/EventParser/ParseMatrixRecord.o ) [33 of 60] Compiling Bio.PDB.EventParser.ParseObsoleting ( Bio/PDB/EventParser/ParseObsoleting.hs, dist/build/Bio/PDB/EventParser/ParseObsoleting.o ) [34 of 60] Compiling Bio.PDB.EventParser.ParseREMARK ( Bio/PDB/EventParser/ParseREMARK.hs, dist/build/Bio/PDB/EventParser/ParseREMARK.o ) [35 of 60] Compiling Bio.PDB.EventParser.ParseREVDAT ( Bio/PDB/EventParser/ParseREVDAT.hs, dist/build/Bio/PDB/EventParser/ParseREVDAT.o ) [36 of 60] Compiling Bio.PDB.EventParser.ParseSEQADV ( Bio/PDB/EventParser/ParseSEQADV.hs, dist/build/Bio/PDB/EventParser/ParseSEQADV.o ) [37 of 60] Compiling Bio.PDB.EventParser.ParseSEQRES ( Bio/PDB/EventParser/ParseSEQRES.hs, dist/build/Bio/PDB/EventParser/ParseSEQRES.o ) [38 of 60] Compiling Bio.PDB.EventParser.ParseSHEET ( Bio/PDB/EventParser/ParseSHEET.hs, dist/build/Bio/PDB/EventParser/ParseSHEET.o ) [39 of 60] Compiling Bio.PDB.EventParser.ParseSITE ( Bio/PDB/EventParser/ParseSITE.hs, dist/build/Bio/PDB/EventParser/ParseSITE.o ) [40 of 60] Compiling Bio.PDB.EventParser.ParseSLTBRG ( Bio/PDB/EventParser/ParseSLTBRG.hs, dist/build/Bio/PDB/EventParser/ParseSLTBRG.o ) [41 of 60] Compiling Bio.PDB.EventParser.ParseSPLIT ( Bio/PDB/EventParser/ParseSPLIT.hs, dist/build/Bio/PDB/EventParser/ParseSPLIT.o ) [42 of 60] Compiling Bio.PDB.EventParser.ParseSSBOND ( Bio/PDB/EventParser/ParseSSBOND.hs, dist/build/Bio/PDB/EventParser/ParseSSBOND.o ) [43 of 60] Compiling Bio.PDB.EventParser.ParseSpecListRecord ( Bio/PDB/EventParser/ParseSpecListRecord.hs, dist/build/Bio/PDB/EventParser/ParseSpecListRecord.o ) [44 of 60] Compiling Bio.PDB.EventParser.ParseTER ( Bio/PDB/EventParser/ParseTER.hs, dist/build/Bio/PDB/EventParser/ParseTER.o ) [45 of 60] Compiling Bio.PDB.EventParser.ParseTITLE ( Bio/PDB/EventParser/ParseTITLE.hs, dist/build/Bio/PDB/EventParser/ParseTITLE.o ) [46 of 60] Compiling Bio.PDB.EventParser.ParseTVECT ( Bio/PDB/EventParser/ParseTVECT.hs, dist/build/Bio/PDB/EventParser/ParseTVECT.o ) [47 of 60] Compiling Bio.PDB.EventParser.PDBEventParser ( Bio/PDB/EventParser/PDBEventParser.hs, dist/build/Bio/PDB/EventParser/PDBEventParser.o ) [48 of 60] Compiling Bio.PDB.Structure ( Bio/PDB/Structure.hs, dist/build/Bio/PDB/Structure.o ) [49 of 60] Compiling Bio.PDB.Iterable.Instances ( Bio/PDB/Iterable/Instances.hs, dist/build/Bio/PDB/Iterable/Instances.o ) [50 of 60] Compiling Bio.PDB.Iterable.Utils ( Bio/PDB/Iterable/Utils.hs, dist/build/Bio/PDB/Iterable/Utils.o ) [51 of 60] Compiling Bio.PDB.Iterable ( Bio/PDB/Iterable.hs, dist/build/Bio/PDB/Iterable.o ) [52 of 60] Compiling Bio.PDB.Fasta ( Bio/PDB/Fasta.hs, dist/build/Bio/PDB/Fasta.o ) [53 of 60] Compiling Bio.PDB.Structure.Elements ( Bio/PDB/Structure/Elements.hs, dist/build/Bio/PDB/Structure/Elements.o ) Bio/PDB/Structure/Elements.hs:32:30: error: • Couldn't match type ‘ByteString’ with ‘[Char]’ Expected type: HashMap [Char] v Actual type: HashMap Element v • In the second argument of ‘M.lookup’, namely ‘dict’ In the second argument of ‘($)’, namely ‘M.lookup (unpack e) dict’ In the expression: fromMaybe withWarning $ M.lookup (unpack e) dict cabal: Leaving directory '/tmp/cabal-tmp-6308/hPDB-1.2.0.7' cabal: Error: some packages failed to install: hPDB-1.2.0.7 failed during the building phase. The exception was: ExitFailure 1