| Safe Haskell | None |
|---|---|
| Language | Haskell2010 |
Parse
Synopsis
- getAbundanceMap :: ByteString -> AbundanceMap
- getFrequencyMap :: AbundanceMap -> FrequencyMap
- getAccSet :: [DuplicationRow] -> AccSet
- parseDuplications :: ByteString -> (Header, [DuplicationRow])
- parseBAM :: Text -> [BamRow]
Documentation
getAbundanceMap :: ByteString -> AbundanceMap Source #
Get the abundance map from the contents of the abundance output.
getFrequencyMap :: AbundanceMap -> FrequencyMap Source #
Convert an abundance map to a frequency map.
getAccSet :: [DuplicationRow] -> AccSet Source #
Get the list of accessions from a duplication row post-Trinity.
parseDuplications :: ByteString -> (Header, [DuplicationRow]) Source #
Get the duplications in an easy to read format.