name:                heatitup-complete
version:             0.5.5.0
synopsis:            Find and annotate ITDs with assembly or read pair joining.
description:         Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the exogenous segments within the spacer using heat diffusion.
homepage:            http://github.com/GregorySchwartz/heatitup-complete#readme
license:             GPL-3
license-file:        LICENSE
author:              Gregory W. Schwartz
maintainer:          gsch@pennmedicine.upenn.edu
copyright:           Copyright: (c) 2019 Gregory W. Schwartz
category:            Bioinformatics
build-type:          Simple
-- extra-source-files:
cabal-version:       >=1.10

library
  hs-source-dirs:      src
  exposed-modules:     Types
                     , Utility
                     , Parse
                     , Merge
                     , Blast
  build-depends:       base >= 4.7 && < 5
                     , bytestring
                     , cassava
                     , containers
                     , fasta
                     , foldl
                     , lens
                     , safe
                     , text
                     , text-show
                     , turtle
                     , vector
  ghc-options:         -O2
  default-language:    Haskell2010

executable heatitup-complete
  hs-source-dirs:      app
  main-is:             Main.hs
  ghc-options:         -threaded -rtsopts -O2
  build-depends:       base
                     , heatitup-complete
                     , bytestring
                     , cassava
                     , containers
                     , fasta
                     , foldl
                     , optparse-applicative
                     , pipes
                     , pipes-text
                     , safe
                     , text
                     , turtle
                     , vector
  default-language:    Haskell2010

source-repository head
  type:     git
  location: https://github.com/GregorySchwartz/heatitup-complete