hs-samtools-0.5.0.0: Read and write SAM, BAM, and CRAM files.

Index

parse_SAM_V1_6_AlignmentData.SAM.Version1_6.Read.Parser.Alignment.Base
parse_SAM_V1_6_Alignment_AOPTData.SAM.Version1_6.Read.Parser.Alignment.AOPT
parse_SAM_V1_6_Alignment_BOPTData.SAM.Version1_6.Read.Parser.Alignment.BOPT
parse_SAM_V1_6_Alignment_FOPTData.SAM.Version1_6.Read.Parser.Alignment.FOPT
parse_SAM_V1_6_Alignment_HOPTData.SAM.Version1_6.Read.Parser.Alignment.HOPT
parse_SAM_V1_6_Alignment_IOPTData.SAM.Version1_6.Read.Parser.Alignment.IOPT
parse_SAM_V1_6_Alignment_ZOPTData.SAM.Version1_6.Read.Parser.Alignment.ZOPT
parse_SAM_V1_6_File_Level_MetadataData.SAM.Version1_6.Read.Parser.Header.HD.Base
parse_SAM_V1_6_File_Level_Metadata_GOData.SAM.Version1_6.Read.Parser.Header.HD.GO
parse_SAM_V1_6_File_Level_Metadata_SOData.SAM.Version1_6.Read.Parser.Header.HD.SO
parse_SAM_V1_6_File_Level_Metadata_SSData.SAM.Version1_6.Read.Parser.Header.HD.SS
parse_SAM_V1_6_File_Level_Metadata_VNData.SAM.Version1_6.Read.Parser.Header.HD.VN
parse_SAM_V1_6_One_Line_CommentData.SAM.Version1_6.Read.Parser.Header.CO.Base
parse_SAM_V1_6_ProgramData.SAM.Version1_6.Read.Parser.Header.PG.Base
parse_SAM_V1_6_Read_GroupData.SAM.Version1_6.Read.Parser.Header.RG.Base
parse_SAM_V1_6_Reference_Sequence_DictionaryData.SAM.Version1_6.Read.Parser.Header.SQ.Base
parse_SAM_V1_6_SAM_V1_6_Program_CLData.SAM.Version1_6.Read.Parser.Header.PG.CL
parse_SAM_V1_6_SAM_V1_6_Program_DSData.SAM.Version1_6.Read.Parser.Header.PG.DS
parse_SAM_V1_6_SAM_V1_6_Program_IDData.SAM.Version1_6.Read.Parser.Header.PG.ID
parse_SAM_V1_6_SAM_V1_6_Program_PNData.SAM.Version1_6.Read.Parser.Header.PG.PN
parse_SAM_V1_6_SAM_V1_6_Program_PPData.SAM.Version1_6.Read.Parser.Header.PG.PP
parse_SAM_V1_6_SAM_V1_6_Program_VNData.SAM.Version1_6.Read.Parser.Header.PG.VN
parse_SAM_V1_6_SAM_V1_6_Read_Group_BCData.SAM.Version1_6.Read.Parser.Header.RG.BC
parse_SAM_V1_6_SAM_V1_6_Read_Group_CNData.SAM.Version1_6.Read.Parser.Header.RG.CN
parse_SAM_V1_6_SAM_V1_6_Read_Group_DSData.SAM.Version1_6.Read.Parser.Header.RG.DS
parse_SAM_V1_6_SAM_V1_6_Read_Group_DTData.SAM.Version1_6.Read.Parser.Header.RG.DT
parse_SAM_V1_6_SAM_V1_6_Read_Group_FOData.SAM.Version1_6.Read.Parser.Header.RG.FO
parse_SAM_V1_6_SAM_V1_6_Read_Group_IDData.SAM.Version1_6.Read.Parser.Header.RG.ID
parse_SAM_V1_6_SAM_V1_6_Read_Group_KSData.SAM.Version1_6.Read.Parser.Header.RG.KS
parse_SAM_V1_6_SAM_V1_6_Read_Group_LBData.SAM.Version1_6.Read.Parser.Header.RG.LB
parse_SAM_V1_6_SAM_V1_6_Read_Group_PGData.SAM.Version1_6.Read.Parser.Header.RG.PG
parse_SAM_V1_6_SAM_V1_6_Read_Group_PIData.SAM.Version1_6.Read.Parser.Header.RG.PI
parse_SAM_V1_6_SAM_V1_6_Read_Group_PLData.SAM.Version1_6.Read.Parser.Header.RG.PL
parse_SAM_V1_6_SAM_V1_6_Read_Group_PMData.SAM.Version1_6.Read.Parser.Header.RG.PM
parse_SAM_V1_6_SAM_V1_6_Read_Group_PUData.SAM.Version1_6.Read.Parser.Header.RG.PU
parse_SAM_V1_6_SAM_V1_6_Read_Group_SMData.SAM.Version1_6.Read.Parser.Header.RG.SM
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_AHData.SAM.Version1_6.Read.Parser.Header.SQ.AH
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_ANData.SAM.Version1_6.Read.Parser.Header.SQ.AN
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_ASData.SAM.Version1_6.Read.Parser.Header.SQ.AS
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_DSData.SAM.Version1_6.Read.Parser.Header.SQ.DS
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_LNData.SAM.Version1_6.Read.Parser.Header.SQ.LN
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_M5Data.SAM.Version1_6.Read.Parser.Header.SQ.M5
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_SNData.SAM.Version1_6.Read.Parser.Header.SQ.SN
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_SPData.SAM.Version1_6.Read.Parser.Header.SQ.SP
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_TPData.SAM.Version1_6.Read.Parser.Header.SQ.TP
parse_SAM_V1_6_SAM_V1_6_Reference_Sequence_Dictionary_URData.SAM.Version1_6.Read.Parser.Header.SQ.UR
readSAM_V1_6Data.SAM.Version1_6.Read.Base
SAM_V1_6 
1 (Type/Class)Data.SAM.Version1_6.Base
2 (Data Constructor)Data.SAM.Version1_6.Base
SAM_V1_6_Alignment 
1 (Type/Class)Data.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
2 (Data Constructor)Data.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignmentData.SAM.Version1_6.Base
sam_v1_6_alignment_aoptData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
SAM_V1_6_Alignment_BOPT 
1 (Type/Class)Data.SAM.Version1_6.Alignment.BOPT
2 (Data Constructor)Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_boptData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
SAM_V1_6_Alignment_BOPT_Float 
1 (Type/Class)Data.SAM.Version1_6.Alignment.BOPT
2 (Data Constructor)Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_floatData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_float_tagData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_float_typeData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_float_valueData.SAM.Version1_6.Alignment.BOPT
SAM_V1_6_Alignment_BOPT_Int16 
1 (Type/Class)Data.SAM.Version1_6.Alignment.BOPT
2 (Data Constructor)Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int16Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int16_tagData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int16_typeData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int16_valueData.SAM.Version1_6.Alignment.BOPT
SAM_V1_6_Alignment_BOPT_Int32 
1 (Type/Class)Data.SAM.Version1_6.Alignment.BOPT
2 (Data Constructor)Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int32Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int32_tagData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int32_typeData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int32_valueData.SAM.Version1_6.Alignment.BOPT
SAM_V1_6_Alignment_BOPT_Int8 
1 (Type/Class)Data.SAM.Version1_6.Alignment.BOPT
2 (Data Constructor)Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int8Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int8_tagData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int8_typeData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_int8_valueData.SAM.Version1_6.Alignment.BOPT
SAM_V1_6_Alignment_BOPT_Word16 
1 (Type/Class)Data.SAM.Version1_6.Alignment.BOPT
2 (Data Constructor)Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word16Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word16_tagData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word16_typeData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word16_valueData.SAM.Version1_6.Alignment.BOPT
SAM_V1_6_Alignment_BOPT_Word32 
1 (Type/Class)Data.SAM.Version1_6.Alignment.BOPT
2 (Data Constructor)Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word32Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word32_tagData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word32_typeData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word32_valueData.SAM.Version1_6.Alignment.BOPT
SAM_V1_6_Alignment_BOPT_Word8 
1 (Type/Class)Data.SAM.Version1_6.Alignment.BOPT
2 (Data Constructor)Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word8Data.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word8_tagData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word8_typeData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_bopt_word8_valueData.SAM.Version1_6.Alignment.BOPT
sam_v1_6_alignment_cigarData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_flagData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_foptData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_hoptData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_ioptData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_mapqData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_pnextData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_posData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_qnameData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_qualData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_rnameData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_rnextData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_seqData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_tlenData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
sam_v1_6_alignment_zoptData.SAM.Version1_6.Alignment.Base, Data.SAM.Version1_6.Alignment
SAM_V1_6_ErrorData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_AOPT_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_AOPT_Type_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_AOPT_Value_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_BOPT_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_BOPT_Type_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_BOPT_Value_Data_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_BOPT_Value_Type_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_CIGAR_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_FLAG_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_FOPT_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_FOPT_Type_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_FOPT_Value_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_HOPT_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_HOPT_Type_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_HOPT_Value_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_IOPT_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_IOPT_Type_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_IOPT_Value_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_MAPQ_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_PNEXT_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_POS_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_QNAME_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_QUAL_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_RNAME_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_RNEXT_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_SEQ_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_TLEN_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_ZOPT_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_ZOPT_Type_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Alignment_ZOPT_Value_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Format_Version_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Format_Version_Tag_MissingData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Format_Version_Value_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Grouping_Of_Alignments_Invalid_ValueData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Grouping_Of_Alignments_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Sorting_Order_Invalid_ValueData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Sorting_Order_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Subsorting_Order_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Subsorting_Order_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_File_Level_Metadata_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_One_Line_Comment_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Program_Command_Line_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Program_Description_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Program_Identifier_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Program_Name_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Program_Previous_PG_ID_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Program_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Program_Version_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Barcode_Sequence_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Date_Run_Produced_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Description_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Flow_Order_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Key_Sequence_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Library_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Platform_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Platform_Model_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Platform_Unit_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Predicted_Median_Insert_Size_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Programs_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Read_Group_Identifier_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Read_Group_Identifier_Tag_MissingData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Sample_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Sequencing_Center_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Read_Group_Tag_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Alternative_Locus_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names_Invalid_ValueData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Description_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Genome_Assembly_Identifier_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_MD5_Checksum_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Molecule_Topology_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Molecule_Topology_Invalid_ValueData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Reference_Sequence_Length_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Reference_Sequence_Length_Invalid_ValueData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Reference_Sequence_Length_MissingData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Reference_Sequence_Name_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Reference_Sequence_Name_Invalid_ValueData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Reference_Sequence_Name_Tag_MissingData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_Species_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_Error_Reference_Sequence_Dictionary_URI_Incorrect_FormatData.SAM.Version1_6.Read.Error
SAM_V1_6_File_Level_Metadata 
1 (Type/Class)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadataData.SAM.Version1_6.Base
SAM_V1_6_File_Level_Metadata_Alignment_Grouping 
1 (Type/Class)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_alignment_groupingData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_alignment_grouping_tagData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_alignment_grouping_valueData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
SAM_V1_6_File_Level_Metadata_Format_Version 
1 (Type/Class)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_format_versionData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_format_version_tagData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_format_version_valueData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
SAM_V1_6_File_Level_Metadata_Sorting_Order 
1 (Type/Class)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_sorting_orderData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_sorting_order_tagData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_sorting_order_valueData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
SAM_V1_6_File_Level_Metadata_SubSorting_Order 
1 (Type/Class)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_subsorting_orderData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_subsorting_order_tagData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
sam_v1_6_file_level_metadata_subsorting_order_valueData.SAM.Version1_6.Header.HD, Data.SAM.Version1_6.Header
SAM_V1_6_One_Line_Comment 
1 (Type/Class)Data.SAM.Version1_6.Header.CO, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.CO, Data.SAM.Version1_6.Header
sam_v1_6_one_line_commentData.SAM.Version1_6.Base
sam_v1_6_one_line_comment_valueData.SAM.Version1_6.Header.CO, Data.SAM.Version1_6.Header
SAM_V1_6_Program 
1 (Type/Class)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_programData.SAM.Version1_6.Base
SAM_V1_6_Program_Command_Line 
1 (Type/Class)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_command_lineData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_command_line_tagData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_command_line_valueData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
SAM_V1_6_Program_Description 
1 (Type/Class)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_descriptionData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_description_tagData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_description_valueData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
SAM_V1_6_Program_Name 
1 (Type/Class)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_nameData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_name_tagData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_name_valueData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
SAM_V1_6_Program_Previous_PG_ID 
1 (Type/Class)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_previous_pg_idData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_previous_pg_id_tagData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_previous_pg_id_valueData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
SAM_V1_6_Program_Record_Identifier 
1 (Type/Class)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_record_identifierData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_record_identifier_tagData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_record_identifier_valueData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
SAM_V1_6_Program_Version 
1 (Type/Class)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_versionData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_version_tagData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
sam_v1_6_program_version_valueData.SAM.Version1_6.Header.PG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_groupData.SAM.Version1_6.Base
SAM_V1_6_Read_Group_Barcode_Sequence 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_barcode_sequenceData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_barcode_sequence_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_barcode_sequence_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Description 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_descriptionData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_description_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_description_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Flow_Order 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_flow_orderData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_flow_order_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_flow_order_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_identiferData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Identifier 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_identifier_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_identifier_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Key_Sequence 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_key_sequenceData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_key_sequence_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_key_sequence_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Library 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_libraryData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_library_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_library_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Platform 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platformData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Platform_Model 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platform_modelData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platform_model_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platform_model_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platform_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Platform_Unit 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platform_unitData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platform_unit_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platform_unit_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_platform_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Predicted_Median_Insert_Size 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_predicted_median_insert_sizeData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_predicted_median_insert_size_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_predicted_median_insert_size_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Programs 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_programsData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_programs_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_programs_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Run_Date 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_run_dateData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_run_date_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_run_date_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Sample 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_sampleData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_sample_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_sample_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Read_Group_Sequencing_Center 
1 (Type/Class)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_sequencing_centerData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_sequencing_center_tagData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
sam_v1_6_read_group_sequencing_center_valueData.SAM.Version1_6.Header.RG, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionaryData.SAM.Version1_6.Base
SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Locus 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_alternative_locus_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_alternative_locus_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_Alternative_Reference_Sequence_Names 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_alternative_reference_sequence_names_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_alternative_reference_sequence_names_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_Description 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_descriptionData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_description_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_description_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_Genome_Assembly_Identifier 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_genome_assembly_identifierData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_genome_assembly_identifier_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_genome_assembly_identifier_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_MD5_Checksum 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_md5_checksumData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_md5_checksum_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_md5_checksum_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_Molecule_Topology 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_molecule_topologyData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_molecule_topology_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_molecule_topology_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_reference_alternative_locusData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_reference_alternative_reference_sequence_namesData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Length 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_reference_sequence_lengthData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_reference_sequence_length_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_reference_sequence_length_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_Reference_Sequence_Name 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_reference_sequence_nameData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_reference_sequence_name_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_reference_sequence_name_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_Species 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_speciesData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_species_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_species_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
SAM_V1_6_Reference_Sequence_Dictionary_URI 
1 (Type/Class)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
2 (Data Constructor)Data.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_uriData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_uri_tagData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header
sam_v1_6_reference_sequence_dictionary_uri_valueData.SAM.Version1_6.Header.SQ, Data.SAM.Version1_6.Header