>$< | Mcmc.Monitor.Parameter, Mcmc.Monitor.ParameterBatch, Mcmc |
@~ | Mcmc.Proposal, Mcmc |
aAutoTune | Mcmc.Algorithm |
Acceptance | Mcmc.Proposal |
acceptance | Mcmc.Chain.Chain |
acceptanceRate | Mcmc.Proposal |
acceptanceRates | Mcmc.Proposal |
aCloseMonitors | Mcmc.Algorithm |
aExecuteMonitors | Mcmc.Algorithm |
aIterate | Mcmc.Algorithm |
aIteration | Mcmc.Algorithm |
Algorithm | Mcmc.Algorithm |
AnalysisName | |
1 (Type/Class) | Mcmc.Settings, Mcmc |
2 (Data Constructor) | Mcmc.Settings, Mcmc |
aName | Mcmc.Algorithm |
aOpenMonitors | Mcmc.Algorithm |
aResetAcceptance | Mcmc.Algorithm |
aSave | Mcmc.Algorithm |
aStdMonitorHeader | Mcmc.Algorithm |
aSummarizeCycle | Mcmc.Algorithm |
autoTuneCycle | Mcmc.Proposal |
beta | Mcmc.Proposal.Simplex, Mcmc |
burnInIterations | Mcmc.Settings, Mcmc |
BurnInSpecification | Mcmc.Settings, Mcmc |
BurnInWithAutoTuning | Mcmc.Settings, Mcmc |
BurnInWithoutAutoTuning | Mcmc.Settings, Mcmc |
ccProposals | Mcmc.Proposal |
Chain | |
1 (Type/Class) | Mcmc.Chain.Chain |
2 (Data Constructor) | Mcmc.Chain.Chain |
chainId | Mcmc.Chain.Chain |
Continue | Mcmc.Settings, Mcmc |
createProposal | Mcmc.Proposal |
Cycle | Mcmc.Proposal, Mcmc |
cycle | Mcmc.Chain.Chain |
cycleFromList | Mcmc.Proposal, Mcmc |
Debug | Mcmc.Settings, Mcmc |
dirichlet | Mcmc.Proposal.Simplex, Mcmc |
emptyA | Mcmc.Proposal |
Environment | |
1 (Type/Class) | Mcmc.Environment |
2 (Data Constructor) | Mcmc.Environment |
ExecutionMode | Mcmc.Settings, Mcmc |
exponential | Mcmc.Prior, Mcmc |
Fail | Mcmc.Settings, Mcmc |
freezeT | Mcmc.Chain.Trace |
fromAcceptance | Mcmc.Proposal |
fromAnalysisName | Mcmc.Settings, Mcmc |
fromIterations | Mcmc.Settings, Mcmc |
fromMHG | Mcmc.Algorithm.Metropolis, Mcmc |
fromNChains | Mcmc.Algorithm.MC3, Mcmc |
fromNSwaps | Mcmc.Algorithm.MC3, Mcmc |
fromPDescription | Mcmc.Proposal |
fromPName | Mcmc.Proposal, Mcmc |
fromPWeight | Mcmc.Proposal, Mcmc |
fromSavedChain | Mcmc.Chain.Save |
fromSwapPeriod | Mcmc.Algorithm.MC3, Mcmc |
gamma | Mcmc.Prior, Mcmc |
generator | Mcmc.Chain.Chain |
genericContinuous | Mcmc.Proposal.Generic |
genericDiscrete | Mcmc.Proposal.Generic |
getMonitorBatchSize | Mcmc.Monitor |
getOptimalRate | Mcmc.Proposal |
headT | Mcmc.Chain.Trace |
Info | Mcmc.Settings, Mcmc |
initializeEnvironment | Mcmc.Environment |
iteration | Mcmc.Chain.Chain |
Iterations | |
1 (Type/Class) | Mcmc.Settings, Mcmc |
2 (Data Constructor) | Mcmc.Settings, Mcmc |
largerThan | Mcmc.Prior, Mcmc |
lengthT | Mcmc.Chain.Trace |
likelihood | Mcmc.Chain.Link |
LikelihoodFunction | Mcmc.Chain.Chain, Mcmc |
likelihoodFunction | Mcmc.Chain.Chain |
Link | |
1 (Type/Class) | Mcmc.Chain.Link |
2 (Data Constructor) | Mcmc.Chain.Link |
link | Mcmc.Chain.Chain |
logHandle | Mcmc.Environment |
lowerThan | Mcmc.Prior, Mcmc |
mBatches | Mcmc.Monitor |
mbpFunc | Mcmc.Monitor.ParameterBatch, Mcmc |
mbpName | Mcmc.Monitor.ParameterBatch, Mcmc |
MC3 | |
1 (Type/Class) | Mcmc.Algorithm.MC3, Mcmc |
2 (Data Constructor) | Mcmc.Algorithm.MC3, Mcmc |
mc3 | Mcmc.Algorithm.MC3, Mcmc |
mc3Generator | Mcmc.Algorithm.MC3, Mcmc |
mc3Iteration | Mcmc.Algorithm.MC3, Mcmc |
mc3Load | Mcmc.Algorithm.MC3, Mcmc |
mc3MHGChains | Mcmc.Algorithm.MC3, Mcmc |
mc3NChains | Mcmc.Algorithm.MC3, Mcmc |
mc3NSwaps | Mcmc.Algorithm.MC3, Mcmc |
mc3ReciprocalTemperatures | Mcmc.Algorithm.MC3, Mcmc |
mc3Save | Mcmc.Algorithm.MC3, Mcmc |
MC3Settings | |
1 (Type/Class) | Mcmc.Algorithm.MC3, Mcmc |
2 (Data Constructor) | Mcmc.Algorithm.MC3, Mcmc |
mc3Settings | Mcmc.Algorithm.MC3, Mcmc |
mc3SwapAcceptance | Mcmc.Algorithm.MC3, Mcmc |
mc3SwapPeriod | Mcmc.Algorithm.MC3, Mcmc |
mClose | Mcmc.Monitor |
mcmc | Mcmc.Mcmc, Mcmc |
mcmcContinue | Mcmc.Mcmc, Mcmc |
mExec | Mcmc.Monitor |
mFiles | Mcmc.Monitor |
MHG | |
1 (Type/Class) | Mcmc.Algorithm.Metropolis, Mcmc |
2 (Data Constructor) | Mcmc.Algorithm.Metropolis, Mcmc |
mhg | Mcmc.Algorithm.Metropolis, Mcmc |
mhgAccept | Mcmc.Algorithm.Metropolis, Mcmc |
MHGChains | Mcmc.Algorithm.MC3, Mcmc |
mhgLoad | Mcmc.Algorithm.Metropolis, Mcmc |
mhgSave | Mcmc.Algorithm.Metropolis, Mcmc |
Monitor | |
1 (Type/Class) | Mcmc.Monitor, Mcmc |
2 (Data Constructor) | Mcmc.Monitor, Mcmc |
monitor | Mcmc.Chain.Chain |
MonitorBatch | Mcmc.Monitor, Mcmc |
monitorBatch | Mcmc.Monitor, Mcmc |
monitorBatchMean | Mcmc.Monitor.ParameterBatch, Mcmc |
monitorBatchMeanE | Mcmc.Monitor.ParameterBatch, Mcmc |
monitorBatchMeanF | Mcmc.Monitor.ParameterBatch, Mcmc |
monitorDouble | Mcmc.Monitor.Parameter, Mcmc |
monitorDoubleE | Mcmc.Monitor.Parameter, Mcmc |
monitorDoubleF | Mcmc.Monitor.Parameter, Mcmc |
MonitorFile | Mcmc.Monitor, Mcmc |
monitorFile | Mcmc.Monitor, Mcmc |
monitorInt | Mcmc.Monitor.Parameter, Mcmc |
MonitorParameter | |
1 (Type/Class) | Mcmc.Monitor.Parameter, Mcmc |
2 (Data Constructor) | Mcmc.Monitor.Parameter, Mcmc |
MonitorParameterBatch | |
1 (Type/Class) | Mcmc.Monitor.ParameterBatch, Mcmc |
2 (Data Constructor) | Mcmc.Monitor.ParameterBatch, Mcmc |
MonitorStdOut | Mcmc.Monitor, Mcmc |
monitorStdOut | Mcmc.Monitor, Mcmc |
mOpen | Mcmc.Monitor |
mpFunc | Mcmc.Monitor.Parameter, Mcmc |
mpName | Mcmc.Monitor.Parameter, Mcmc |
msHeader | Mcmc.Monitor |
mStdOut | Mcmc.Monitor |
NChains | |
1 (Type/Class) | Mcmc.Algorithm.MC3, Mcmc |
2 (Data Constructor) | Mcmc.Algorithm.MC3, Mcmc |
negative | Mcmc.Prior, Mcmc |
NoBurnIn | Mcmc.Settings, Mcmc |
noLikelihood | Mcmc.Chain.Chain, Mcmc |
noPrior | Mcmc.Chain.Chain, Mcmc |
normal | Mcmc.Prior, Mcmc |
NoSave | Mcmc.Settings, Mcmc |
NoTune | Mcmc.Proposal, Mcmc |
NSwaps | |
1 (Type/Class) | Mcmc.Algorithm.MC3, Mcmc |
2 (Data Constructor) | Mcmc.Algorithm.MC3, Mcmc |
openWithExecutionMode | Mcmc.Settings, Mcmc |
Order | Mcmc.Proposal, Mcmc |
orderProposals | Mcmc.Proposal |
Overwrite | Mcmc.Settings, Mcmc |
Parallel | Mcmc.Settings, Mcmc |
ParallelizationMode | Mcmc.Settings, Mcmc |
PDescription | |
1 (Type/Class) | Mcmc.Proposal |
2 (Data Constructor) | Mcmc.Proposal |
pDescription | Mcmc.Proposal |
PDimension | |
1 (Type/Class) | Mcmc.Proposal |
2 (Data Constructor) | Mcmc.Proposal |
pDimension | Mcmc.Proposal |
PDimensionUnknown | Mcmc.Proposal |
PName | |
1 (Type/Class) | Mcmc.Proposal, Mcmc |
2 (Data Constructor) | Mcmc.Proposal, Mcmc |
pName | Mcmc.Proposal |
poisson | Mcmc.Prior, Mcmc |
positive | Mcmc.Prior, Mcmc |
prior | Mcmc.Chain.Link |
PriorFunction | Mcmc.Chain.Chain, Mcmc |
priorFunction | Mcmc.Chain.Chain |
product' | Mcmc.Prior, Mcmc |
Proposal | |
1 (Type/Class) | Mcmc.Proposal, Mcmc |
2 (Data Constructor) | Mcmc.Proposal |
proposalHeader | Mcmc.Proposal |
proposalHLine | Mcmc.Proposal |
ProposalSimple | Mcmc.Proposal |
pSimple | Mcmc.Proposal |
pTuner | Mcmc.Proposal |
pushA | Mcmc.Proposal |
pushT | Mcmc.Chain.Trace |
PWeight | |
1 (Type/Class) | Mcmc.Proposal, Mcmc |
2 (Data Constructor) | Mcmc.Proposal, Mcmc |
pWeight | Mcmc.Proposal |
Quiet | Mcmc.Settings, Mcmc |
RandomO | Mcmc.Proposal, Mcmc |
RandomReversibleO | Mcmc.Proposal, Mcmc |
ReciprocalTemperatures | Mcmc.Algorithm.MC3, Mcmc |
renderDuration | Mcmc.Monitor.Time |
renderDurationS | Mcmc.Monitor.Time |
renderLog | Mcmc.Monitor.Log |
renderTime | Mcmc.Monitor.Time |
replicateT | Mcmc.Chain.Trace |
resetA | Mcmc.Proposal |
sAnalysisName | Mcmc.Settings, Mcmc |
Save | Mcmc.Settings, Mcmc |
savedAcceptance | Mcmc.Chain.Save |
SavedChain | |
1 (Type/Class) | Mcmc.Chain.Save |
2 (Data Constructor) | Mcmc.Chain.Save |
savedId | Mcmc.Chain.Save |
savedIteration | Mcmc.Chain.Save |
savedLink | Mcmc.Chain.Save |
savedSeed | Mcmc.Chain.Save |
savedTrace | Mcmc.Chain.Save |
savedTuningParameters | Mcmc.Chain.Save |
SaveMode | Mcmc.Settings, Mcmc |
sBurnIn | Mcmc.Settings, Mcmc |
scale | Mcmc.Proposal.Scale, Mcmc |
scaleBactrian | Mcmc.Proposal.Bactrian, Mcmc |
scaleContrarily | Mcmc.Proposal.Scale, Mcmc |
scaleUnbiased | Mcmc.Proposal.Scale, Mcmc |
Sequential | Mcmc.Settings, Mcmc |
SequentialO | Mcmc.Proposal, Mcmc |
SequentialReversibleO | Mcmc.Proposal, Mcmc |
setOrder | Mcmc.Proposal, Mcmc |
Settings | |
1 (Type/Class) | Mcmc.Settings, Mcmc |
2 (Data Constructor) | Mcmc.Settings, Mcmc |
settings | Mcmc.Environment |
settingsCheck | Mcmc.Settings, Mcmc |
settingsLoad | Mcmc.Settings, Mcmc |
settingsSave | Mcmc.Settings, Mcmc |
sExecutionMode | Mcmc.Settings, Mcmc |
Simplex | Mcmc.Proposal.Simplex, Mcmc |
simplexFromVector | Mcmc.Proposal.Simplex, Mcmc |
simplexUniform | Mcmc.Proposal.Simplex, Mcmc |
sIterations | Mcmc.Settings, Mcmc |
slide | Mcmc.Proposal.Slide, Mcmc |
slideBactrian | Mcmc.Proposal.Bactrian, Mcmc |
slideContrarily | Mcmc.Proposal.Slide, Mcmc |
slideSymmetric | Mcmc.Proposal.Slide, Mcmc |
slideUniformSymmetric | Mcmc.Proposal.Slide, Mcmc |
sParallelizationMode | Mcmc.Settings, Mcmc |
sSaveMode | Mcmc.Settings, Mcmc |
start | Mcmc.Chain.Chain |
startingTime | Mcmc.Environment |
state | Mcmc.Chain.Link |
summarizeCycle | Mcmc.Proposal |
summarizeProposal | Mcmc.Proposal |
sVerbosity | Mcmc.Settings, Mcmc |
SwapPeriod | |
1 (Type/Class) | Mcmc.Algorithm.MC3, Mcmc |
2 (Data Constructor) | Mcmc.Algorithm.MC3, Mcmc |
takeT | Mcmc.Chain.Trace |
tFunc | Mcmc.Proposal |
thawT | Mcmc.Chain.Trace |
toSavedChain | Mcmc.Chain.Save |
toVector | Mcmc.Proposal.Simplex, Mcmc |
tParam | Mcmc.Proposal |
Trace | Mcmc.Chain.Trace |
trace | Mcmc.Chain.Chain |
transformKeysA | Mcmc.Proposal |
Tune | |
1 (Type/Class) | Mcmc.Proposal, Mcmc |
2 (Data Constructor) | Mcmc.Proposal, Mcmc |
tune | Mcmc.Proposal |
tuneCycle | Mcmc.Proposal |
Tuner | Mcmc.Proposal |
uniform | Mcmc.Prior, Mcmc |
Verbosity | Mcmc.Settings, Mcmc |
Warn | Mcmc.Settings, Mcmc |