Bio.SamTools.Bam
data HeaderSeq
data Header
nTargets
targetSeqList
targetSeq
targetSeqName
targetSeqLen
lookupTarget
data Bam1
header
targetID
targetName
targetLen
position
isPaired
isProperPair
isUnmap
isMateUnmap
isReverse
isMateReverse
isRead1
isRead2
isSecondary
isQCFail
isDup
isSupplementary
cigars
queryName
queryLength
querySeq
queryQual
mateTargetID
mateTargetName
mateTargetLen
matePosition
insertSize
nMismatch
nHits
matchDesc
auxGeti
auxGetf
auxGetd
auxGetA
auxGetZ
auxGet
addAuxA
addAuxi
addAuxZ
refSpLoc
refSeqLoc
data InHandle
inHeader
openTamInFile
openTamInFileWithIndex
openBamInFile
closeInHandle
withTamInFile
withTamInFileWithIndex
withBamInFile
get1
readBams
data OutHandle
outHeader
openTamOutFile
openBamOutFile
closeOutHandle
withTamOutFile
withBamOutFile
put1