-- Hoogle documentation, generated by Haddock
-- See Hoogle, http://www.haskell.org/hoogle/


-- | Sequence Alignment
--   
--   FFI wrappers for global and local string alignment functions
@package seqalign
@version 0.2.0.2

module Alignment
cDist :: Ptr Word8 -> CSize -> Ptr Word8 -> CSize -> IO CInt
editDistance :: ByteString -> ByteString -> Int
data KSWR
KSWR :: CInt -> CInt -> CInt -> CInt -> CInt -> CInt -> CInt -> KSWR
[score] :: KSWR -> CInt
[targend] :: KSWR -> CInt
[querend] :: KSWR -> CInt
[score2] :: KSWR -> CInt
[targend2] :: KSWR -> CInt
[targbeg] :: KSWR -> CInt
[querbeg] :: KSWR -> CInt
cLocalAlign :: CInt -> Ptr Word8 -> CInt -> Ptr Word8 -> CInt -> CInt -> CInt -> Ptr KSWR -> IO ()
bs_align :: ByteString -> ByteString -> KSWR
cCigarAlign :: CInt -> Ptr Word8 -> CInt -> Ptr Word8 -> CInt -> CInt -> CInt -> Ptr CInt -> Ptr (Ptr CInt) -> IO CInt
free_finalizer :: FunPtr (Ptr a -> IO ())
cigar_align :: ByteString -> ByteString -> (Int, [(Char, Int)])
instance GHC.Classes.Eq Alignment.KSWR
instance GHC.Read.Read Alignment.KSWR
instance GHC.Show.Show Alignment.KSWR
instance Foreign.Storable.Storable Alignment.KSWR