-- Hoogle documentation, generated by Haddock
-- See Hoogle, http://www.haskell.org/hoogle/


-- | Sequence Alignment
--   
@package seqalign
@version 0.2.0.4

module Alignment
cDist :: Ptr Word8 -> CSize -> Ptr Word8 -> CSize -> IO CInt
editDistance :: ByteString -> ByteString -> Int
data KSWR
KSWR :: CInt -> CInt -> CInt -> CInt -> CInt -> CInt -> CInt -> KSWR
score :: KSWR -> CInt
targend :: KSWR -> CInt
querend :: KSWR -> CInt
score2 :: KSWR -> CInt
targend2 :: KSWR -> CInt
targbeg :: KSWR -> CInt
querbeg :: KSWR -> CInt
cLocalAlign :: CInt -> Ptr Word8 -> CInt -> Ptr Word8 -> CInt -> CInt -> CInt -> Ptr KSWR -> IO ()
bs_align :: ByteString -> ByteString -> KSWR
cCigarAlign :: CInt -> Ptr Word8 -> CInt -> Ptr Word8 -> CInt -> CInt -> CInt -> Ptr CInt -> Ptr (Ptr CInt) -> IO CInt
free_finalizer :: FunPtr (Ptr a -> IO ())
cigar_align :: ByteString -> ByteString -> (Int, [(Char, Int)])
instance Show KSWR
instance Read KSWR
instance Eq KSWR
instance Storable KSWR