úÎô!   @Read a transcript table file as a list of annotated transcripts 9Parse a transcript table line, not including the newline Write a transcript table file -Produce a single transcript table line for a  , newline not included.  Convert a  , to a string consisting of GTF lines. These  lines will contain exon& lines for the transcript, as well as  CDS lines if the   has a . =Read a GTF annotation file. The entire file is read at once, D because a single annotated transcript can span many lines in a GTF @ file that are not required to occur in any specific order. The  transcript  ' transcript location is assembled from  exon8 annotations and any CDS location is then produced from CDS A annotations, with an error occurring if the CDS is not a single , contiguous location within the transcript. !"#$%&'()*+,-  Convert a   to a BED annotation line.  Convert a  * to a BED annotation line, specifying the  score and itemRGB fields. score itemRGB  transcript .Read all BED format annotations in a BED file Iteratee to convert an ./ over a 0,  such as the standard 1, into an iteratee over a  list of   annotations from the file. 2  Minimalistic 3)-style parser for a BED format line, not ! including the trailing newline. 456   7      !"#$%&'()*+,-./01234534567839:;<=>?@ABseqloc-datafiles-0.1Bio.SeqLoc.TranscriptTableBio.SeqLoc.GTFBio.SeqLoc.BedBio.SeqLoc.ZeptoUtils readTable parseLine writeTable unparseLinetranscriptToGtfreadGtfTranscriptstranscriptToBedStdtranscriptToBedreadBedTranscriptsbedTranscriptEnumbedZP seqloc-0.2Bio.SeqLoc.Transcript Transcriptnastranddecfieldfield dropFielddecimalGtfTrxs gtfExonLocs gtfCdsLocs gtfTogeneGtfLinegtfGenegtfTrxgtfFtypegtfLoccds splocLinesBio.SeqLoc.OnSeq SpliceSeqLoc mkTranscripts mkTranscriptexonLoccdsLoccdsIntoTranscript mergeCLocs allSameNameftypeCds ftypeExon insertGtfLine gtflineItergtflineattriteratee-0.8.1.2Data.Iteratee.BaseIterateebytestring-0.9.1.10Data.ByteString.Internal ByteStringData.Iteratee.IO fileDriver bedLineEnumattoparsec-0.8.5.0Data.Attoparsec.ZeptoParser bedTrxLoc bedCdsLoccommas