úÎÁg     Safe-Infered@Read a transcript table file as a list of annotated transcripts 9Parse a transcript table line, not including the newline Write a transcript table file -Produce a single transcript table line for a  , newline not included.  Safe-Infered    Safe-Infered Convert a  , to a string consisting of GTF lines. These  lines will contain exon& lines for the transcript, as well as  CDS lines if the   has a . =Read a GTF annotation file. The entire file is read at once, D because a single annotated transcript can span many lines in a GTF @ file that are not required to occur in any specific order. The  transcript ' transcript location is assembled from  exon8 annotations and any CDS location is then produced from CDS A annotations, with an error occurring if the CDS is not a single , contiguous location within the transcript.  Safe-Infered Convert a   to a BED annotation line.  Convert a  * to a BED annotation line, specifying the  score and itemRGB fields. .Read all BED format annotations in a BED file Iteratee to convert an  over a ,  such as the standard , into an iteratee over a  list of   annotations from the file.  Minimalistic )-style parser for a BED format line, not ! including the trailing newline. score itemRGB  transcript          !"#$%&'()seqloc-datafiles-0.2.2.2Bio.SeqLoc.TranscriptTableBio.SeqLoc.GTFBio.SeqLoc.BedBio.SeqLoc.ZeptoUtils readTable parseLine writeTable unparseLinetranscriptToGtfreadGtfTranscriptsreadGtfTranscriptsErrtranscriptToBedStdtranscriptToBedreadBedTranscriptsbedTranscriptEnumbedZPseqloc-0.5.1.1Bio.SeqLoc.Transcript Transcript firstfieldstranddecfieldfield dropFielddecimal unlessAtEndcdsBio.SeqLoc.OnSeq SpliceSeqLociteratee-0.8.9.4Data.Iteratee.BaseIterateebytestring-0.9.2.1Data.ByteString.Internal ByteStringData.Iteratee.IO fileDriverattoparsec-0.10.2.0Data.Attoparsec.ZeptoParser