| Safe Haskell | None |
|---|---|
| Language | Haskell2010 |
Bio.SeqLoc.TranscriptTable
Description
Minimal tab-delimited annotation of Transcript locations. Each
Transcript has one line, containing the geneId and trxId fields,
followed by the LocRepr representation of the SpliceSeqLoc
location of the transcript, and then the location of the CDS within
the transcript or "n/a" if there is no CDS.
- readTable :: FilePath -> IO [Transcript]
- parseLine :: ByteString -> Maybe Transcript
- writeTable :: FilePath -> [Transcript] -> IO ()
- unparseLine :: Transcript -> ByteString
Documentation
readTable :: FilePath -> IO [Transcript] Source
Read a transcript table file as a list of annotated transcripts
parseLine :: ByteString -> Maybe Transcript Source
Parse a transcript table line, not including the newline
writeTable :: FilePath -> [Transcript] -> IO () Source
Write a transcript table file
unparseLine :: Transcript -> ByteString Source
Produce a single transcript table line for a Transcript, newline not included.